update tbi test and snap

famosab · May 15, 2024 · 2111eb3 · 2111eb3
1 parent d7542a4
commit 2111eb3
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Showing 2 changed files with 2 additions and 22 deletions.
diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
@@ -35,7 +35,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert snapshot(path(process.out.tbi[0][1]).linesGzip.size()).match("tbi") }
+                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
             )
         }
 
@@ -67,7 +67,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions_allelspecific") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert snapshot(path(process.out.tbi[0][1]).linesGzip.size()).match("tbi_allelspecific") }
+                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
             )
         }
 

diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
@@ -1,14 +1,4 @@
 {
-    "tbi_allelspecific": {
-        "content": [
-            20
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
-        },
-        "timestamp": "2024-05-15T13:01:08.112484"
-    },
     "versions": {
         "content": [
             [
@@ -70,16 +60,6 @@
         },
         "timestamp": "2024-05-15T13:01:24.370421"
     },
-    "tbi": {
-        "content": [
-            28
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
-        },
-        "timestamp": "2024-05-15T13:00:49.378451"
-    },
     "versions_allelspecific": {
         "content": [
             [