change to check for filename

famosab · May 15, 2024 · a8b5e5c · a8b5e5c
1 parent 4aeb7bc
commit a8b5e5c
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Showing 2 changed files with 22 additions and 2 deletions.
diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
@@ -35,7 +35,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
+                { assert snapshot(file(process.out.tbi.get(0).get(1)).name).match() }
             )
         }
 
@@ -67,7 +67,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions_allelspecific") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
+                { assert snapshot(file(process.out.tbi.get(0).get(1)).name).match() }
             )
         }
 

diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
@@ -1,4 +1,24 @@
 {
+    "human - vcf": {
+        "content": [
+            "test.vcf.gz.tbi"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.0"
+        },
+        "timestamp": "2024-05-15T13:31:50.727658"
+    },
+    "human - vcf - allele-specific": {
+        "content": [
+            "test.vcf.gz.tbi"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.0"
+        },
+        "timestamp": "2024-05-15T13:29:42.331816"
+    },
     "versions": {
         "content": [
             [