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HIPC Dashboard pipeline v1.1.0
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@kcs3 kcs3 released this 18 Mar 01:42
· 398 commits to master since this release
v1.1.0
68078b0

This release includes further cleaning of the curated data and also changes to the pipeline code, including:

  • changes to how descriptive terms are divided between the "response_behavior" and "comparison" fields. Terms such as "correlated" now are included in the "response_behavior", e.g. "positively correlated"
  • add choose_joining_preposition() for constructing observation summary statements
  • add trimws() on input
  • add check_response_components_overlap() - quality control to check for the case where a gene list that should be split between two rows, e.g. up and down regulated genes, ends up with one half in one row but the entire list in the other row
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