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update maturity model
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ahwagner committed Mar 2, 2024
1 parent 8e51ba6 commit 2af6663
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Showing 6 changed files with 157 additions and 472 deletions.
8 changes: 4 additions & 4 deletions schema/catvrs-source.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ $defs:
- $refCurie: gks.core:IRI

ProteinSequenceConsequence:
maturity: Alpha
maturity: draft
type: object
inherits: CategoricalVariation
description: >-
Expand All @@ -70,7 +70,7 @@ $defs:
- definingContext

CanonicalAllele:
maturity: Alpha
maturity: draft
inherits: CategoricalVariation
description: >-
A canonical allele is defined by an `Allele <https://vrs.ga4gh.org/en/2.0/terms_and_model.html#variation>`
Expand All @@ -95,7 +95,7 @@ $defs:
- definingContext

CategoricalCnv:
maturity: Alpha
maturity: draft
type: object
inherits: CategoricalVariation
description: >-
Expand Down Expand Up @@ -146,7 +146,7 @@ $defs:
- location

DescribedVariation:
maturity: Alpha
maturity: draft
type: object
inherits: CategoricalVariation
description: >-
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8 changes: 4 additions & 4 deletions schema/catvrs.json
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
]
},
"ProteinSequenceConsequence": {
"maturity": "Alpha",
"maturity": "draft",
"type": "object",
"description": "A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a CanonicalAllele, is defined by an `Allele <https://vrs.ga4gh.org/en/2.0/terms_and_model.html#variation>` that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).",
"properties": {
Expand Down Expand Up @@ -99,7 +99,7 @@
"additionalProperties": false
},
"CanonicalAllele": {
"maturity": "Alpha",
"maturity": "draft",
"description": "A canonical allele is defined by an `Allele <https://vrs.ga4gh.org/en/2.0/terms_and_model.html#variation>` that is representative of a collection of congruent Alleles, each of which depict the same nucleic acid change on different underlying reference sequences. Congruent representations of an Allele often exist across different genome assemblies and associated cDNA transcript representations.",
"type": "object",
"properties": {
Expand Down Expand Up @@ -177,7 +177,7 @@
"additionalProperties": false
},
"CategoricalCnv": {
"maturity": "Alpha",
"maturity": "draft",
"type": "object",
"description": "A categorical variation domain is defined first by a sequence derived from a canonical [Location ](https://vrs.ga4gh.org/en/2.0/terms_and_model.html#Location) , which is representative of a collection of congruent Locations. The change or count of this sequence is also described, either by a numeric value (e.g. \"3 or more copies\") or categorical representation (e.g. \"high-level gain\"). Categorical CNVs may optionally be defined by rules specifying the location match characteristics for member CNVs.",
"properties": {
Expand Down Expand Up @@ -285,7 +285,7 @@
"additionalProperties": false
},
"DescribedVariation": {
"maturity": "Alpha",
"maturity": "draft",
"type": "object",
"description": "Some categorical variation concepts are supported by custom nomenclatures or text-descriptive representations for which a categorical variation model does not exist. DescribedVariation is a class that adds requirements and contextual semantics to the `label` and `description` fields to indicate how a categorical variation concept should be evaluated for matching variants.",
"properties": {
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8 changes: 4 additions & 4 deletions schema/catvrs.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ $defs:
- $ref: '#/$defs/DescribedVariation'
- $ref: '#/$defs/ProteinSequenceConsequence'
ProteinSequenceConsequence:
maturity: Alpha
maturity: draft
type: object
description: A change that occurs in a protein sequence as a result of genomic
changes. Due to the degenerate nature of the genetic code, there are often several
Expand Down Expand Up @@ -74,7 +74,7 @@ $defs:
- type
additionalProperties: false
CanonicalAllele:
maturity: Alpha
maturity: draft
description: A canonical allele is defined by an `Allele <https://vrs.ga4gh.org/en/2.0/terms_and_model.html#variation>` that
is representative of a collection of congruent Alleles, each of which depict
the same nucleic acid change on different underlying reference sequences. Congruent
Expand Down Expand Up @@ -135,7 +135,7 @@ $defs:
- type
additionalProperties: false
CategoricalCnv:
maturity: Alpha
maturity: draft
type: object
description: A categorical variation domain is defined first by a sequence derived
from a canonical [Location ](https://vrs.ga4gh.org/en/2.0/terms_and_model.html#Location)
Expand Down Expand Up @@ -234,7 +234,7 @@ $defs:
- type
additionalProperties: false
DescribedVariation:
maturity: Alpha
maturity: draft
type: object
description: Some categorical variation concepts are supported by custom nomenclatures
or text-descriptive representations for which a categorical variation model
Expand Down
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