update MSP+SM and rebuild

.requirements.txt

@@ -2,6 +2,6 @@ pytest
 sphinx ~= 7.2
 sphinx-rtd-theme ~= 1.2
 pyyaml
-ga4gh.gks.metaschema==0.3.0b12
+ga4gh.gks.metaschema==0.3.0b13
 jsonschema
 referencing

schema/cat-vrs/cat-vrs-source.yaml

@@ -49,7 +49,7 @@ $defs:
       A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature
       of the genetic code, there are often several genomic changes that can cause a protein sequence consequence.
       The protein sequence consequence, like a :ref:`CanonicalAllele`, is defined by an
-      `Allele <https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#>`
+      `Allele <https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#>`_
       that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).
     properties:
       type:
@@ -98,8 +98,8 @@ $defs:
     inherits: CategoricalVariation
     maturity: draft
     description: >-
-      A categorical variation domain is defined first by a sequence derived from a canonical `SequenceLocation
-      <https://vrs.ga4gh.org/en/2.x/concepts/LocationAndReference/SequenceLocation.html>`_ ,
+      A categorical variation domain is defined first by a sequence derived from a canonical
+      `SequenceLocation <https://vrs.ga4gh.org/en/2.x/concepts/LocationAndReference/SequenceLocation.html>`_ ,
       which is representative of a collection of congruent Locations. The change or count of this sequence is
       also described, either by a numeric value (e.g. "3 or more copies") or categorical representation
       (e.g. "high-level gain"). Categorical CNVs may optionally be defined by rules specifying the location

schema/cat-vrs/def/ProteinSequenceConsequence.rst

@@ -1,6 +1,6 @@
 **Computational Definition**
 
-A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a :ref:`CanonicalAllele`, is defined by an `Allele <https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#>` that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).
+A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a :ref:`CanonicalAllele`, is defined by an `Allele <https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#>`_ that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).
 
 **Information Model**
 

schema/cat-vrs/json/ProteinSequenceConsequence

@@ -4,7 +4,7 @@
    "title": "ProteinSequenceConsequence",
    "type": "object",
    "maturity": "draft",
-   "description": "A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a CanonicalAllele, is defined by an `Allele <https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#>` that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).",
+   "description": "A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a CanonicalAllele, is defined by an [Allele](https://vrs.ga4gh.org/en/2.x/concepts/MolecularVariation/Allele.html#) that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).",
    "properties": {
       "id": {
          "type": "string",