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Merge branch 'develop' into develop
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vsmalladi authored Sep 30, 2024
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Expand Up @@ -39,13 +39,21 @@ TES Compliant Implementations
### Client
- [cwl-tes](https://github.com/ohsu-comp-bio/cwl-tes)
- [Cromwell](https://cromwell.readthedocs.io/en/stable/backends/TES/)
- [Nextflow](https://www.nextflow.io/docs/latest/executor.html#ga4gh-tes)
- [ELIXIR Cloud Components](https://elixir-cloud-components.vercel.app/)
- [py-tes](https://github.com/ohsu-comp-bio/py-tes)
- [Nextflow](https://www.nextflow.io/docs/stable/executor.html#ga4gh-tes)
- [Snakemake](https://snakemake.readthedocs.io/en/stable/executing/cloud.html#executing-a-snakemake-workflow-via-ga4gh-tes)
- [Toil](https://toil.readthedocs.io/en/latest/)
- [St. Jude Rust Labs](https://github.com/stjude-rust-labs/tes)



### Server
- [Funnel](https://ohsu-comp-bio.github.io/funnel/)
- [TESK](https://github.com/EMBL-EBI-TSI/TESK)
- [TES Azure](https://github.com/microsoft/ga4gh-tes)
- [Pulsar](https://pulsar.readthedocs.io/)
- [proTES](https://github.com/elixir-cloud-aai/proTES)

### Compatibility Matrix

Expand All @@ -54,8 +62,8 @@ TES Compliant Implementations
| | cwl-tes | Cromwell | Nextflow | Snakemake |
| ----------- | ------------- | --------- | ---------| --------- |
| **Funnel** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes) | Compatible | [Compatible](https://www.nextflow.io/docs/latest/executor.html#ga4gh-tes) | [Compatible](https://snakemake.readthedocs.io/en/stable/executing/cloud.html#executing-a-snakemake-workflow-via-ga4gh-tes) |
| **TESK** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes/pull/25) | [Compatible](https://cromwell.readthedocs.io/en/stable/backends/TES/) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) | Not tested but should work |
| **TES Azure*& | Not tested | [Compatible](https://github.com/microsoft/CromwellOnAzure) | Not tested | Not tested but should work |
| **TESK** | [Compatible](https://github.com/ohsu-comp-bio/cwl-tes/pull/25) | [Compatible](https://cromwell.readthedocs.io/en/stable/backends/TES/) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) | [Compatible](https://github.com/EMBL-EBI-TSI/tesk-core/pull/19) | Not tested but should work |
| **TES Azure** | Not tested | [Compatible](https://github.com/microsoft/CromwellOnAzure) | [Compatible](https://www.nextflow.io/docs/stable/executor.html#ga4gh-tes) | Not tested but should work |


TES Service Examples
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