Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Moved outstanding exp-func-imp PR into this PR with latest reorg #215

Closed
wants to merge 21 commits into from

Conversation

larrybabb
Copy link
Contributor

This is the draft for the latest ExpFuncImpact profiles applied to the latest reorg of folders that came out of the ASHG unconference work.

Ready for review, refine, approve and merge after @ahwagner, @mbrush and @larrybabb meet on 11/8/2024.

@larrybabb larrybabb marked this pull request as ready for review November 7, 2024 23:40
@larrybabb
Copy link
Contributor Author

larrybabb commented Nov 7, 2024

@mbrush and @ahwagner please review this and let's push it if it's clean enough based on all conversations/decisions to date. We can continue with another PR for the next tranche of changes.

Notes from gks-tech sync mtg 11/7

  1. change 'type' to 'groupType' on TherapyGroup
  2. remove 'type on TraitSet. Use extensions
  3. keep 'base'
  4. rename all files with full names (sans variant)
    i.e cohort-allele-frequency-study-result-profile-source.yaml
  5. rename shared-concept-source.yaml to domain-entities-source.yaml
  6. delete assay-var-efect-source.yaml (double check nothing was lost)
    (convert tests)
  7. pathogenicity-evidenceline-profile-source.yaml (with proposition in it)
  8. make EvidenceLine heritable

@larrybabb
Copy link
Contributor Author

I added a mock-up of a VarPath statement in the acmg-2015 schema subfolder that builds for the next area of discussion.

@ahwagner ahwagner linked an issue Nov 8, 2024 that may be closed by this pull request
…mpact profiles. Some questions remain (see comments in test case fixtures)
Copy link
Contributor Author

@larrybabb larrybabb left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I'm good on this. I'd like to address all this on Fri Nov 8 and then merge this. We should determine what's beyond the scope covered by this PR and target that for the next PR.

mbrush and others added 12 commits November 8, 2024 08:38
…y-evidence-line-profile-source.yaml

adding dash to evidence-line file name to be consistent with sue of dashes between class names in other profile file names (e.g. study-result)
…yaml

Updated comments for discussion/review among developers, based on most recent conversations.
- Updated comments/questions about this profile based on outcomes of recent discussions.
- made a couple minor improvements to attribute descriptions.
@larrybabb larrybabb closed this Nov 15, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

rename VA-spec filenames
3 participants