2.0.0-a12

What's Changed

• cicd: fix action caching key by @jsstevenson in #455
• cicd: add basic precommit hooks by @jsstevenson in #454
• feat!: update gks-common / vrs models by @korikuzma in #453

Full Changelog: 2.0.0-a11...2.0.0-a12

2.0.0-a11

What's Changed

• docs: fix alt text for github contributors by @korikuzma in #438
• sync with root-inheritance-fix from VRS by @larrybabb in #441
• feat: optionally suppress console output by @jsstevenson in #445
• chore: update VCF annotator type annotations for 3.10-12 by @jsstevenson in #444
• docs: update VCF module docstrings by @jsstevenson in #448
• feat!: enhance annotator CLI options by @jsstevenson in #449
• feat!: declare annotator CLI as console entrypoint by @jsstevenson in #447
• feat: enable logging in annotator CLI by @jsstevenson in #450
• fix: do not allow SequenceLocation to have negative start/end v… by @korikuzma in #443
• fix param typo in vcf annotator by @quinnwai in #451

New Contributors

• @quinnwai made their first contribution in #451

Full Changelog: 2.0.0-a10...2.0.0-a11

2.0.0-a10

What's Changed

• cicd: update actions revs by @jsstevenson in #436
• fix: ensure Entity objects return type as str by @korikuzma in #434
• fix: revert Pydantic custom serializer by @korikuzma in #435

Full Changelog: 2.0.0-a9...2.0.0-a10

2.0.0-a9

What's Changed

• feat: VRS 1.3 digests may be computed for Alleles and Sequence Locations by @ahwagner in #427
• feat: add enum for as_version + add restrictions to ga4gh_serialize_as_version by @korikuzma in #431
• feat!: update/rename classes to refect public API access and ABC by @korikuzma in #430
• refactor: remove unused code + small cleanup by @korikuzma in #432

Full Changelog: 2.0.0-a8...2.0.0-a9

2.0.0-a8

What's Changed

• chore: Pydantic fields -> model_fields by @korikuzma in #414
• feat!: rename core_models to common_models by @korikuzma in #413
• build!: remove support for python 3.9 and make 3.12 the dev default by @korikuzma in #416
• build: update SeqRepo collection to 2024-02-20 by @korikuzma in #418
• feat: add make command (nbready) to create jupyter notebook venv by @korikuzma in #419
• feat!: update vrs/common models by @korikuzma in #417
• feat: create enum for gks-common + vrs types by @korikuzma in #420
• chore!: update vrs/gks-common submodules by @korikuzma in #424
• refactor: remove _internal directories by @korikuzma in #423
• refactor: rename VrsTypes enum to VrsType by @korikuzma in #425
• refactor!: split gks-common module into domain + entity by @korikuzma in #422
• fix: remove domain models from entity models by @korikuzma in #426

Full Changelog: 2.0.0-a7...2.0.0-a8

2.0.0-a7

What's Changed

• build: configure build with pyproject.toml by @jsstevenson in #388
• docs: updates to vcf_annotator.md by @wesleygoar in #385
• feat: update gks-common/vrs model by @korikuzma in #391
• fix: get make test to run by @korikuzma in #396
• build: update supported python versions by @korikuzma in #399
• refactor: use Annotated with StringConstraints instead of constr by @korikuzma in #394
• Only attempt to create allele if values were extracted by @ehclark in #401
• Adding the getting_started notebooks and removing the rest. by @toneillbroad in #402
• fix: add password to docker-compose.yml for uta service by @korikuzma in #405
• docs: update readme (install seqrepo, psql cmd, + submodules) by @korikuzma in #406

Full Changelog: 2.0.0-a6...2.0.0-a7

2.0.0-a6

What's Changed

• Test enref / deref behavior by @ahwagner in #357
• docs: update docstring for VrsObjectIdentifierIs by @korikuzma in #355
• simplify normalization implementation by @ahwagner in #358
• feat!: parameterize normalize in translator by @korikuzma in #361
• Add support for mito m. in translate_from by @larrybabb in #362
• chore: remove submodules from package data by @korikuzma in #371
• chore: move VariationNormalizerRESTDataProxy to notebooks by @korikuzma in #374
• feat: refactor hgvsTools and support c. translation by @larrybabb in #366
• chore: remove unused code by @korikuzma in #373
• refactor: simplify validating reference sequence by @korikuzma in #375
• docs: update + reorganize readme by @korikuzma in #376
• chore!: remove localizer by @korikuzma in #379
• cicd: fix release when multiple branches track same tag by @korikuzma in #384
• feat: add inclusion of "NT" prefixed refseq accessions to hgvs tools by @larrybabb in #383

New Contributors

• @larrybabb made their first contribution in #362

Full Changelog: 2.0.0-a5...2.0.0-a6

2.0.0-a5

What's Changed

• Restore repeat subunit length re-computation for normalization by @ehclark in #352
• Issue 351.2 by @ahwagner in #353

Full Changelog: 2.0.0-a4...2.0.0-a5

2.0.0-a4

What's Changed

• computed identifiers using pydantic model serializers by @ahwagner in #342

Full Changelog: 2.0.0-a3...2.0.0-a4

2.0.0-a3

What's Changed

• cicd: delete stale action by @korikuzma in #316
• cicd: update branch name for release by @korikuzma in #319
• chore: update submodules by @korikuzma in #320
• docs: update uta docker image in readme by @korikuzma in #323
• docs: change order in readme (#294) by @korikuzma in #321
• feat: add intro to terra notebook by @korikuzma in #318
• docs: include more information on postgresql in readme by @korikuzma in #322
• docs: update vrs-python and vrs version correspondences by @korikuzma in #324
• docs: update default branches for VRS-Python / VRS by @korikuzma in #326
• chore: remove unused files by @jsstevenson in #329
• fix: use start/end constraints for digest and refgetAccession fields by @jsstevenson in #328
• cicd: remove tox by @jsstevenson in #331
• chore: remove more unused stuff by @jsstevenson in #332
• Issue #334: Normalization by @ahwagner in #336
• fix: add rle_seq_limit to AlleleTranslator by @korikuzma in #346
• feat: add param to VCFAnnotator to optionally require validation checks by @korikuzma in #345
• cicd: update branch name in release.yml by @korikuzma in #348

Full Changelog: 2.0.0-a2...2.0.0-a3