Research Software Ecosystem (RSEc) and the Galaxy Codex - blog post #2696
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bgruening
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Jul 11, 2024
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| The output of the CoDex was integrated into the RSEc by the development of a [Galaxy Tool Metadata GitHub Action](https://github.com/research-software-ecosystem/utils/tree/main/galaxytool-import), | ||
| which populates the RSEc entries with metadata from the CoDex. | ||
| An example of a tool that has metadata from multiple sources, including Galaxy is [abricate](https://github.com/research-software-ecosystem/content/tree/c840b13928330e97c7eb6ccb6a779ff9b0f37835/data/abricate). |
bgruening
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Jul 11, 2024
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| ### Tool metadata output | ||
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| The script will generate a TSV file with each tool found in the list of GitHub repositories and metadata for these tools: |
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Cool, thanks @paulzierep |
supernord
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Jul 11, 2024
supernord
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supernord
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supernord
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supernord
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Jul 12, 2024
| It makes use of a sophisticated CI architecture that collects metadata for research software metadata, providing a unified resource for researchers. | ||
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| The RSEc collects metadata from [bio.tools](https://bio.tools), [Bioconda](https://bioconda.github.io/), BioContainers, [Debian Med](https://www.debian.org/devel/debian-med/index.de.html), [Galaxy CoDex](https://github.com/galaxyproject/galaxy_codex), | ||
| [OpenEBench](https://openebench.bsc.es), and [WorkflowHub](https://workflowhub.eu/) available in the [Content repositroy](https://github.com/research-software-ecosystem/content). |
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| [OpenEBench](https://openebench.bsc.es), and [WorkflowHub](https://workflowhub.eu/) available in the [Content repositroy](https://github.com/research-software-ecosystem/content). | |
| [OpenEBench](https://openebench.bsc.es), and [WorkflowHub](https://workflowhub.eu/). This metadata is made available in the [RSEc content repositroy](https://github.com/research-software-ecosystem/content). |
supernord
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Jul 12, 2024
supernord
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supernord
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Co-authored-by: Johan Gustafsson <[email protected]>
Co-authored-by: Johan Gustafsson <[email protected]>
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Cool, thanks! |
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Research Software Ecosystem (RSEc) needs a bog post for the ELIXIR report.
Here is the initial draft, including the Galaxy Codex as well.
@bebatut @bgruening @hmenager @supernord
Please let me know if there is anything particular you would like to see here, will try to finalize beginning of next week.