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Add tools microgalaxy labs #264

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merged 3 commits into from
Dec 19, 2024

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paulzierep
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This PR adds a script that automatically creates tool sections for the EDAM operations with most used tools.
Its not very mature, but should work to improve the microGalaxy lab, quick and working.
Currently only working for microGalaxy, since some bits are custom:

# Tool request
        entry = {
            "title_md": "Request a new tool",
            "description_md": "You can request a new tool by contacting the microGalaxy community: [email protected]",
        }
        entries.append(entry)

        # Complete tool list
        entry = {
            "title_md": "See the complete tool list",
            "description_md": "Our comprehensive curated tool list is available via https://galaxyproject.github.io/galaxy_codex/microgalaxy",
        }
        entries.append(entry)

        # Add manual entries to the top of the tabs
        yaml_data["tabs"].append(
            {
                "id": "more_tools",
                "title": "More tools !",
                "heading_md": f"Request a new tools or look at the complete list",
                "content": entries,
            }

Need to think about how to make this generic.
Currently, only the suite ID, description, and tool users are shown and the wrapper with links to the tools.
Also, I think some of the links do not work using this logic.

@bebatut bebatut merged commit 25c79cc into galaxyproject:main Dec 19, 2024
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2 participants