Merge pull request #5674 from galaxyproject/create-pull-request/patch… #3896
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| name: Deploy Website | |
| concurrency: | |
| group: deploy-${{ github.head_ref }} | |
| cancel-in-progress: false # Not sure about this. | |
| on: | |
| push: | |
| branches: | |
| - main | |
| schedule: | |
| # nightly builds to keep in sync with changes to the video library | |
| - cron: '0 0 * * *' | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| if: github.repository_owner == 'galaxyproject' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Avg commits between successive monday: | |
| # Min. : 2.0 | |
| # 1st Qu.: 25.0 | |
| # Median : 54.5 | |
| # Mean : 65.2 | |
| # 3rd Qu.: 94.0 | |
| # Max. :282.0 | |
| fetch-depth: 400 | |
| persist-credentials: false | |
| # BEGIN Dependencies | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| architecture: 'x64' | |
| - uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: "3.2" | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '19' | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| vendor/bundle | |
| ~/.npm | |
| key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}-node- | |
| ${{ runner.os }}-gems- | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y build-essential libxi-dev libglu1-mesa-dev libglew-dev pkg-config graphviz # for node | |
| gem install bundler | |
| bundle config path vendor/bundle | |
| bundle install --jobs 4 --retry 3 | |
| rm -f package.json package-lock.json yarn.lock | |
| npm install markdown-yaml-metadata-parser lunr | |
| bundle pristine ffi | |
| # END Dependencies | |
| - name: Prepare Site Metadata | |
| run: | | |
| gem install bundler | |
| python -m pip install --upgrade pip | |
| pip install requests ephemeris | |
| export PATH=/home/runner/.local/bin:$PATH | |
| make annotate ACTIVATE_ENV=pwd | |
| curl -L https://docs.google.com/spreadsheets/d/1NfZhi5Jav7kl9zFCkeb7rIC2F8xW1isruv1TeO4WpNI/export\?format\=tsv | ruby bin/prepare_feedback.rb | |
| curl -L https://hexylena.github.io/toolshed-version-database/tool-meta.json > metadata/tool-meta.json | |
| curl -L https://edamontology.org/EDAM.csv > metadata/EDAM.csv | |
| make rebuild-search-index ACTIVATE_ENV=pwd | |
| bundle exec rdoc bin _plugins/ --output gtn_rdoc --template rorvswild | |
| - name: Build Site | |
| run: | | |
| JEKYLL_ENV=production bundle exec jekyll build --strict_front_matter -d _site/training-material | |
| env: | |
| GTN_FORK: ${{ github.repository_owner }} | |
| - name: Add jupyter notebooks | |
| run: | | |
| # Remove our existing directory which was a placeholder | |
| rm -rf _site/training-material/jupyter/ | |
| # Collect all notebooks into a tmp dir | |
| mkdir /tmp/notebook/ | |
| ruby bin/filter-pyolite-safe | xargs -I{} -n1 cp '{}' /tmp/notebook | |
| # Build the notebook site and add to deployment. | |
| pip install jupyterlab~=3.5.1 jupyterlite==0.1.0b18 jupyterlite-xeus-sqlite==0.2.1 | |
| jupyter lite build --contents /tmp/notebook | |
| mv _output _site/training-material/jupyter/ | |
| - name: Mandatory pre-deploy checks | |
| run: | | |
| bundle exec ruby bin/lint-deploy.rb | |
| - name: Deploy 🚀 | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./_site/training-material/ | |
| publish_branch: gh-pages |