Merge pull request #4908 from galaxyproject/coydog-powan

dev.wfh upload
galaxyproject · Jun 25, 2024 · 2ce4f63 · 2ce4f63
2 parents a86628a + c916faf
commit 2ce4f63
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diff --git a/.github/workflows/workflowhub.yml b/.github/workflows/workflowhub.yml
@@ -0,0 +1,54 @@
+name: "[Cron] Upload workflows to (DEV)WorkflowHub"
+
+on:
+  schedule:
+    # * is a special character in YAML so you have to quote this string
+    # We'll run this daily at noon.
+    - cron:  '59 12 * * *'
+  workflow_dispatch:
+
+jobs:
+  runner-job:
+    if: github.repository_owner == 'galaxyproject'
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 200
+
+      # BEGIN Dependencies
+      - uses: actions/setup-python@v2
+        with:
+          python-version: '3.11'
+          architecture: 'x64'
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: "3.1"
+      - uses: actions/cache@v2
+        with:
+          path: |
+            vendor/bundle
+            ~/.npm
+          key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}-node-${{ hashFiles('**/package-lock.json') }}
+          restore-keys: |
+            ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}-node-
+            ${{ runner.os }}-gems-
+      - name: Install dependencies
+        run: |
+          gem install bundler
+          bundle config path vendor/bundle
+          bundle install --jobs 4 --retry 3
+          bundle pristine ffi
+      # END Dependencies
+
+      # Required to build the RO-Crates
+      - name: Build Site
+        run: |
+          JEKYLL_ENV=production bundle exec jekyll build --strict_front_matter -d _site/training-material
+
+      - name: Upload workflows
+        run: |
+          python bin/wfh-upload.py
+        env:
+          DEV_WFH_TOKEN: ${{ secrets.DEV_WFH_TOKEN }}
diff --git a/ORGANISATIONS.yaml b/ORGANISATIONS.yaml
@@ -19,35 +19,41 @@ avans-atgm:
     joined: 2020-11
     url: https://avans.nl
     avatar: "/training-material/shared/images/logo-avans.png"
+    ror: "015d5s513"
 
 carpentries:
     name: The Carpentries
     joined: 2021-09
+    ror: "0356fgm10"
 
 earlham:
     name: Earlham Institute
     joined: 2017-09
     url: https://www.earlham.ac.uk/
     avatar: "/training-material/shared/images/earlham_logo.svg"
+    ror: "018cxtf62"
 
 edctp:
     name: EDCTP
     description: The European & Developing Countries Clinical Trials Partnership
     url: https://www.edctp.org/
     avatar: "/training-material/shared/images/edctp.jpg"
     github: false
+    ror: "031jv9v19"
 
 egi:
     name: EGI
     url: https://www.egi.eu/
     avatar: https://cdn.egi.eu/app/uploads/2021/11/egi-logo.svg
     github: false
+    ror: "052jj4m32"
 
 elixir-europe:
     name: ELIXIR Europe
     joined: 2017-09
     url: https://elixir-europe.org
     avatar: "/training-material/shared/images/elixir.png"
+    ror: "044rwnt51"
 
 elixir-goblet-ttt:
     name: ELIXIR Goblet Train the Trainers
@@ -61,43 +67,50 @@ embl-ebi:
     url: https://www.ebi.ac.uk
     avatar: https://raw.githubusercontent.com/nomadscientist/scrnaseq_training/d0fccaa9dc8dc8615eb7146d6c5e96bd36f11f3a/EMBL_EBI_Logo_black.svg
     github: false
+    ror: "02catss52"
 
 erasmusmc:
     name: ErasmusMC
     description: Erasmus Medical Center
     url: https://www.erasmusmc.nl
     avatar: "/training-material/shared/images/logo-erasmusmc.png"
     github: false
+    ror: "018906e22"
 
 eu:
     name: The European Union
     url: https://european-union.europa.eu
     avatar: "/training-material/shared/images/EU-logo.jpg"
     github: false
+    ror: "019w4f821"
 
 find:
     name: FIND
     description: The Foundation for Innovative New Diagnostics
     url: https://www.finddx.org/
     avatar: "/training-material/shared/images/FIND.png"
     github: false
+    ror: "05tcsqz68"
 
 ifb:
     name: Institut Français de Bioinformatique
     url: https://www.france-bioinformatique.fr/
     avatar: "/training-material/shared/images/ifb.png"
     github: false
+    ror: "045f7pv37"
 
 inab-certh:
     name: INAB|CERTH
     url: "https://www.inab.certh.gr/"
     avatar: "/training-material/shared/images/inab-certh.png"
+    ror: "03bndpq63"
 
 irccs:
     name: IRCCS Ospedale San Raffaele
     url: "https://www.hsr.it/"
     avatar: "/training-material/shared/images/irccs.jpg"
     github: false
+    ror: "039zxt351"
 
 jetstream2:
     name: JetStream
@@ -110,6 +123,7 @@ johnshopkins:
     url: "https://www.jhu.edu/"
     avatar: "/training-material/shared/images/hopkins.png"
     github: false
+    ror: "00za53h95"
 
 linq:
   name: LINQ
@@ -123,17 +137,20 @@ minnesotauni:
     url:  "https://twin-cities.umn.edu/"
     avatar: "/training-material/shared/images/minnesotauni.png"
     github: false
+    ror: "017zqws13"
 
 MPIIE:
     name: Max Planck Institute of Immunology and Epigenetics
     url: https://www.ie-freiburg.mpg.de
     avatar: https://raw.githubusercontent.com/bgruening/presentations/master/shared/resources/img/14_MPI_IE_logo_mit_180.gif
     github: false
+    ror: "058xzat49"
 
 ncbi:
     name: National Center for Biotechnology Information
     url: "https://www.ncbi.nlm.nih.gov/"
     avatar: "/training-material/shared/images/ncbi.png"
+    ror: "02meqm098"
 
 panacea:
     name: PanACEA
@@ -153,6 +170,7 @@ petermac:
     name: Peter MacCallum Cancer Centre
     url: "https://www.petermac.org/"
     avatar: "/training-material/shared/images/petermac.png"
+    ror: "02a8bt934"
 
 pndb:
     name: Pôle National de Données de Biodiversité
@@ -165,36 +183,42 @@ psu:
     url: http://www.psu.edu
     avatar: "/training-material/shared/images/psu.png"
     github: false
+    ror: "04p491231"
 
 qiime2:
     name: QIIME2
     url: https://qiime2.org/
     avatar: https://avatars.githubusercontent.com/u/18176583?s=200&v=4
 
+
 sanbi:
     name: SANBI/UWC
     url: https://www.sanbi.org/
     avatar: "/training-material/shared/images/sanbi.png"
     description: "South African National Bioinformatics Institute, University of the Western Cape"
     github: false
+    ror: "005r3tp02"
 
 san-raffaele-uni:
     name: Università Vita-Salute San Raffaele
     url: "https://www.unisr.it/"
     avatar: "/training-material/shared/images/uni_san_raffaele.svg"
     github: false
+    ror: "01gmqr298"
 
 sciensano:
   name: Sciensano
   url: "https://www.sciensano.be"
   avatar: "/training-material/shared/images/sciensano.jpg"
   github: false
+  ror: "04ejags36"
 
 swiss-tph:
     name: Swiss Tropical and Public Health Institute
     url: https://www.swisstph.ch/en/
     avatar: "/training-material/shared/images/swiss-tph.png"
     github: false
+    ror: "03adhka07"
 
 tb-capt:
     name: TB-CAPT
@@ -207,23 +231,25 @@ uga:
     url: https://www.univ-grenoble-alpes.fr/
     avatar: /training-material/shared/images/logo-uga.svg
     github: false
+    ror: "02rx3b187"
 
 uni-freiburg:
     name: University of Freiburg
     url: https://www.uni-freiburg.de/
     avatar: https://raw.githubusercontent.com/bgruening/presentations/a2e38e4b007994af798320db3a0131c4bb891c0e/shared/resources/img/logo_freiburg.jpg
     github: false
+    ror: "0245cg223"
 
 UTas:
     name: University of Tasmania
     url: https://www.utas.edu.au/
     avatar: "/training-material/shared/images/UTas_logo.png"
     github: false
+    ror: "01nfmeh72"
 
 vib:
     name: Vlaams Instituut voor Biotechnologie
     url: https://vib.be/
     avatar: "/training-material/shared/images/logo-vib.png"
     github: false
-
-
+    ror: "03xrhmk39"
diff --git a/_config.yml b/_config.yml
@@ -158,6 +158,7 @@ icon-tag:
   galaxy-tags: fas fa-tags
   galaxy-toggle: fas fa-toggle-on
   galaxy-upload: fas fa-upload
+  galaxy-download: fas fa-download
   galaxy-wf-connection: fas fa-arrows-alt-h
   galaxy-wf-edit: fa fa-edit
   galaxy-wf-new: fas fa-plus

diff --git a/_layouts/base_slides.html b/_layouts/base_slides.html
@@ -40,8 +40,8 @@
         {%- elsif page.tags contains "galaxy" %}{% assign coverimage = "/assets/images/GalaxyNews.png" %}
         {%- elsif page.tags contains "gat" %}{% assign coverimage = "/assets/images/gat.png" %}
         {%- else %}{% assign coverimage = "/assets/images/GTNLogo1000.png" %}{% endif %}
-        {% assign og_image = page.og_image | default: coverimage | default: topic.og_image | default: "/assets/images/GTNLogo1000.png" %}
-        <meta property="og:image" content="{{ og_image | prepend: site.baseurl }}">
+        {% assign og_image = page.og_image | default: page['cover-image'] | default: topic.og_image | default: coverimage | default: "assets/images/GTNLogo1000.png" %}
+	<meta property="og:image" content="{% if og_image contains 'https://' %}{{ og_image }}{% else %}{{ site.url }}{{ site.baseurl }}/{{ og_image }}{% endif %}">
 
         <script type="application/ld+json">
             {% include _includes/material.jsonld material=page topic=topic site=site %}

diff --git a/_layouts/contributor_index.html b/_layouts/contributor_index.html
@@ -254,6 +254,14 @@ <h2>External Links</h2>
 				</div>
 				{% endif %}
 
+				{% if entity.ror %}
+				<div class="contact-items">
+					<a title="ROR" href="https://ror.org/{{ entity.ror }}">
+						ROR:{{ entity.ror }}
+					</a>
+				</div>
+				{% endif %}
+
 				{% if entity.github != false %}
 				<div class="contact-items">
 					<a title="GitHub" href="https://github.com/{{ page.contributor }}">