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address testing failures
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nomadscientist committed Dec 20, 2024
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# Introduction

Public single cell datasets seem to accumulate by the second. Well annotated, quality datasets are slightly trickier to find, which is why projects like the [Single Cell Expression Atlas](https://www.ebi.ac.uk/gxa/sc/home) (SCXA) exist - to curate datasets for public use. Here, we will guide you through transforming data imported from the SCXA repository into the input file required for the [Filter, Plot, Explore tutorial]({% link topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.md %}) and we will also show how to use the public atlases for your own research.

> <agenda-title></agenda-title>
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## Get Data onto Galaxy
To start, let's get our dataset loaded into Galaxy.

{% include _includes/cyoa-choices.html option1="EBI Data Retrieval" option2="Importing from a history" option3="Uploading from Zenodo" default="EBI-Data-Retrieval" text="There are multiple ways in which to collect the data for this tutorial. I find it easiest to do so via the EBI Data Retrieval." %}
{% include _includes/cyoa-choices.html option1="EBI Data Retrieval" option2="Importing from a history" option3="Uploading from Zenodo" default="EBI Data Retrieval" text="There are multiple ways in which to collect the data for this tutorial. I find it easiest to do so via the EBI Data Retrieval." %}

<div class='EBI-Data-Retrieval' markdown='1'>
> <hands-on-title>EBI Data Retrieval</hands-on-title>
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