updated

documentation/5/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: c3c61cb8429cb0866abf4ba89c8c5432
+config: f495d85ded1f289701b492e681ecef7c
 tags: 645f666f9bcd5a90fca523b33c5a78b7

documentation/5/_downloads/1eed1518b8928bc24e721527ef1f9970/mnist_mb_classifier.ipynb

@@ -35,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.11.5"
+      "version": "3.8.12"
     }
   },
   "nbformat": 4,

documentation/5/_downloads/64c7fcd62013f68609d54d02d741b663/potjans_microcircuit.ipynb

@@ -35,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.11.5"
+      "version": "3.8.12"
     }
   },
   "nbformat": 4,

documentation/5/_downloads/f57116a727438d4e47eb66f1b799aa48/superspike_demo.ipynb

@@ -35,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.11.5"
+      "version": "3.8.12"
     }
   },
   "nbformat": 4,

documentation/5/_sources/bibliography.rst.txt

@@ -3,8 +3,12 @@
 ============
 Bibliography
 ============
+.. [izhikevich2003simple] Izhikevich, E. M. (2003). Simple model of spiking neurons. IEEE Transactions on neural networks, 14(6), 1569-1572. https://doi.org/10.1109/TNN.2003.820440
+.. [Knight2018] Knight, J. C., & Nowotny, T. (2018). GPUs Outperform Current HPC and Neuromorphic Solutions in Terms of Speed and Energy When Simulating a Highly-Connected Cortical Model. Frontiers in Neuroscience, 12(December), 1–19. https://doi.org/10.3389/fnins.2018.00941
 .. [Morrison2008] Morrison, A., Diesmann, M., & Gerstner, W. (2008). Phenomenological models of synaptic plasticity based on spike timing. Biological Cybernetics, 98, 459–478. https://doi.org/10.1007/s00422-008-0233-1
+.. [nowotny2005self] Nowotny, T., Huerta, R., Abarbanel, H. D., & Rabinovich, M. I. (2005). Self-organization in the olfactory system: one shot odor recognition in insects. Biological cybernetics, 93, 436-446. https://doi.org/10.1007/s00422-005-0019-7
 .. [Potjans2014] Potjans, T. C., & Diesmann, M. (2014). The Cell-Type Specific Cortical Microcircuit: Relating Structure and Activity in a Full-Scale Spiking Network Model. Cerebral Cortex, 24(3), 785–806. https://doi.org/10.1093/cercor/bhs358
-.. [Zenke2018] Zenke, F., & Ganguli, S. (2018). SuperSpike: Supervised Learning in Multilayer Spiking Neural Networks. Neural Computation, 30(6), 1514–1541. https://doi.org/10.1162/neco_a_01086
-.. [Knight2018] Knight, J. C., & Nowotny, T. (2018). GPUs Outperform Current HPC and Neuromorphic Solutions in Terms of Speed and Energy When Simulating a Highly-Connected Cortical Model. Frontiers in Neuroscience, 12(December), 1–19. https://doi.org/10.3389/fnins.2018.00941
-.. [Turner2022] Turner, J. P., Knight, J. C., Subramanian, A., & Nowotny, T. (2022). mlGeNN: accelerating SNN inference using GPU-enabled neural networks. Neuromorphic Computing and Engineering, 2(2), 024002. https://doi.org/10.1088/2634-4386/ac5ac5
+.. [Rulkov2002] Rulkov, N. F. (2002). Modeling of spiking-bursting neural behavior using two-dimensional map. Physical Review E, 65(4), 041922. https://doi.org/10.1103/PhysRevE.65.041922
+.. [Traub1991] Traub, R. D., & Miles, R. (1991). Neuronal networks of the hippocampus (Vol. 777). Cambridge University Press.
+.. [Turner2022] Turner, J. P., Knight, J. C., Subramanian, A., & Nowotny, T. (2022). mlGeNN: accelerating SNN inference using GPU-enabled neural networks. Neuromorphic Computing and Engineering, 2(2), 024002. https://doi.org/10.1088/2634-4386/ac5ac5
+.. [Zenke2018] Zenke, F., & Ganguli, S. (2018). SuperSpike: Supervised Learning in Multilayer Spiking Neural Networks. Neural Computation, 30(6), 1514–1541. https://doi.org/10.1162/neco_a_01086

documentation/5/_sources/source/pygenn.rst.txt

@@ -41,14 +41,6 @@ pygenn.custom\_update\_models module
    :undoc-members:
    :show-inheritance:
 
-pygenn.deprecated module
-------------------------
-
-.. automodule:: pygenn.deprecated
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
 pygenn.genn\_groups module
 --------------------------
 

documentation/5/_static/_sphinx_javascript_frameworks_compat.js

@@ -1,20 +1,9 @@
-/*
- * _sphinx_javascript_frameworks_compat.js
- * ~~~~~~~~~~
- *
- * Compatability shim for jQuery and underscores.js.
- *
- * WILL BE REMOVED IN Sphinx 6.0
- * xref RemovedInSphinx60Warning
+/* Compatability shim for jQuery and underscores.js.
  *
+ * Copyright Sphinx contributors
+ * Released under the two clause BSD licence
  */
 
-/**
- * select a different prefix for underscore
- */
-$u = _.noConflict();
-
-
 /**
  * small helper function to urldecode strings
  *

documentation/5/_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -324,17 +324,17 @@ aside.sidebar {
 p.sidebar-title {
     font-weight: bold;
 }
+
 nav.contents,
 aside.topic,
-
 div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
+
 nav.contents,
 aside.topic,
-
 div.topic {
     border: 1px solid #ccc;
     padding: 7px;
@@ -375,7 +375,6 @@ div.sidebar > :last-child,
 aside.sidebar > :last-child,
 nav.contents > :last-child,
 aside.topic > :last-child,
-
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
@@ -385,7 +384,6 @@ div.sidebar::after,
 aside.sidebar::after,
 nav.contents::after,
 aside.topic::after,
-
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -611,25 +609,6 @@ ul.simple p {
     margin-bottom: 0;
 }
 
-/* Docutils 0.17 and older (footnotes & citations) */
-dl.footnote > dt,
-dl.citation > dt {
-    float: left;
-    margin-right: 0.5em;
-}
-
-dl.footnote > dd,
-dl.citation > dd {
-    margin-bottom: 0em;
-}
-
-dl.footnote > dd:after,
-dl.citation > dd:after {
-    content: "";
-    clear: both;
-}
-
-/* Docutils 0.18+ (footnotes & citations) */
 aside.footnote > span,
 div.citation > span {
     float: left;
@@ -654,8 +633,6 @@ div.citation > p:last-of-type:after {
     clear: both;
 }
 
-/* Footnotes & citations ends */
-
 dl.field-list {
     display: grid;
     grid-template-columns: fit-content(30%) auto;
@@ -668,10 +645,6 @@ dl.field-list > dt {
     padding-right: 5px;
 }
 
-dl.field-list > dt:after {
-    content: ":";
-}
-
 dl.field-list > dd {
     padding-left: 0.5em;
     margin-top: 0em;
@@ -697,6 +670,16 @@ dd {
     margin-left: 30px;
 }
 
+.sig dd {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+.sig dl {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
 dl > dd:last-child,
 dl > dd:last-child > :last-child {
     margin-bottom: 0;
@@ -765,6 +748,14 @@ abbr, acronym {
     cursor: help;
 }
 
+.translated {
+    background-color: rgba(207, 255, 207, 0.2)
+}
+
+.untranslated {
+    background-color: rgba(255, 207, 207, 0.2)
+}
+
 /* -- code displays --------------------------------------------------------- */
 
 pre {

documentation/5/_static/doctools.js

@@ -4,12 +4,19 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
 "use strict";
 
+const BLACKLISTED_KEY_CONTROL_ELEMENTS = new Set([
+  "TEXTAREA",
+  "INPUT",
+  "SELECT",
+  "BUTTON",
+]);
+
 const _ready = (callback) => {
   if (document.readyState !== "loading") {
     callback();
@@ -18,73 +25,11 @@ const _ready = (callback) => {
   }
 };
 
-/**
- * highlight a given string on a node by wrapping it in
- * span elements with the given class name.
- */
-const _highlight = (node, addItems, text, className) => {
-  if (node.nodeType === Node.TEXT_NODE) {
-    const val = node.nodeValue;
-    const parent = node.parentNode;
-    const pos = val.toLowerCase().indexOf(text);
-    if (
-      pos >= 0 &&
-      !parent.classList.contains(className) &&
-      !parent.classList.contains("nohighlight")
-    ) {
-      let span;
-
-      const closestNode = parent.closest("body, svg, foreignObject");
-      const isInSVG = closestNode && closestNode.matches("svg");
-      if (isInSVG) {
-        span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
-      } else {
-        span = document.createElement("span");
-        span.classList.add(className);
-      }
-
-      span.appendChild(document.createTextNode(val.substr(pos, text.length)));
-      parent.insertBefore(
-        span,
-        parent.insertBefore(
-          document.createTextNode(val.substr(pos + text.length)),
-          node.nextSibling
-        )
-      );
-      node.nodeValue = val.substr(0, pos);
-
-      if (isInSVG) {
-        const rect = document.createElementNS(
-          "http://www.w3.org/2000/svg",
-          "rect"
-        );
-        const bbox = parent.getBBox();
-        rect.x.baseVal.value = bbox.x;
-        rect.y.baseVal.value = bbox.y;
-        rect.width.baseVal.value = bbox.width;
-        rect.height.baseVal.value = bbox.height;
-        rect.setAttribute("class", className);
-        addItems.push({ parent: parent, target: rect });
-      }
-    }
-  } else if (node.matches && !node.matches("button, select, textarea")) {
-    node.childNodes.forEach((el) => _highlight(el, addItems, text, className));
-  }
-};
-const _highlightText = (thisNode, text, className) => {
-  let addItems = [];
-  _highlight(thisNode, addItems, text, className);
-  addItems.forEach((obj) =>
-    obj.parent.insertAdjacentElement("beforebegin", obj.target)
-  );
-};
-
 /**
  * Small JavaScript module for the documentation.
  */
 const Documentation = {
   init: () => {
-    Documentation.highlightSearchWords();
     Documentation.initDomainIndexTable();
     Documentation.initOnKeyListeners();
   },
@@ -126,51 +71,6 @@ const Documentation = {
     Documentation.LOCALE = catalog.locale;
   },
 
-  /**
-   * highlight the search words provided in the url in the text
-   */
-  highlightSearchWords: () => {
-    const highlight =
-      new URLSearchParams(window.location.search).get("highlight") || "";
-    const terms = highlight.toLowerCase().split(/\s+/).filter(x => x);
-    if (terms.length === 0) return; // nothing to do
-
-    // There should never be more than one element matching "div.body"
-    const divBody = document.querySelectorAll("div.body");
-    const body = divBody.length ? divBody[0] : document.querySelector("body");
-    window.setTimeout(() => {
-      terms.forEach((term) => _highlightText(body, term, "highlighted"));
-    }, 10);
-
-    const searchBox = document.getElementById("searchbox");
-    if (searchBox === null) return;
-    searchBox.appendChild(
-      document
-        .createRange()
-        .createContextualFragment(
-          '<p class="highlight-link">' +
-            '<a href="javascript:Documentation.hideSearchWords()">' +
-            Documentation.gettext("Hide Search Matches") +
-            "</a></p>"
-        )
-    );
-  },
-
-  /**
-   * helper function to hide the search marks again
-   */
-  hideSearchWords: () => {
-    document
-      .querySelectorAll("#searchbox .highlight-link")
-      .forEach((el) => el.remove());
-    document
-      .querySelectorAll("span.highlighted")
-      .forEach((el) => el.classList.remove("highlighted"));
-    const url = new URL(window.location);
-    url.searchParams.delete("highlight");
-    window.history.replaceState({}, "", url);
-  },
-
   /**
    * helper function to focus on search bar
    */
@@ -210,15 +110,11 @@ const Documentation = {
     )
       return;
 
-    const blacklistedElements = new Set([
-      "TEXTAREA",
-      "INPUT",
-      "SELECT",
-      "BUTTON",
-    ]);
     document.addEventListener("keydown", (event) => {
-      if (blacklistedElements.has(document.activeElement.tagName)) return; // bail for input elements
-      if (event.altKey || event.ctrlKey || event.metaKey) return; // bail with special keys
+      // bail for input elements
+      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
+      // bail with special keys
+      if (event.altKey || event.ctrlKey || event.metaKey) return;
 
       if (!event.shiftKey) {
         switch (event.key) {
@@ -240,10 +136,6 @@ const Documentation = {
               event.preventDefault();
             }
             break;
-          case "Escape":
-            if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) break;
-            Documentation.hideSearchWords();
-            event.preventDefault();
         }
       }
 

documentation/5/_static/documentation_options.js

@@ -10,5 +10,5 @@ var DOCUMENTATION_OPTIONS = {
     SOURCELINK_SUFFIX: '.txt',
     NAVIGATION_WITH_KEYS: false,
     SHOW_SEARCH_SUMMARY: true,
-    ENABLE_SEARCH_SHORTCUTS: false,
+    ENABLE_SEARCH_SHORTCUTS: true,
 };