Small refactor FastQC (#2763) #1
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| name: "Windows tests" | |
| on: | |
| push: | |
| paths: | |
| # runs e.g. when version updated, module added, or dependency added | |
| - "pyproject.toml" | |
| pull_request: | |
| paths: | |
| - "pyproject.toml" | |
| jobs: | |
| unit_tests: | |
| name: "Windows" | |
| runs-on: windows-latest | |
| timeout-minutes: 10 | |
| env: | |
| # GitHub currently has 4 cores available for Windows runners | |
| # https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories | |
| worker_cores: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Set up Windows with C++ for numpy | |
| - name: "Visual Studio Command Prompt tool" | |
| run: cmd "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" ${{ matrix.platform-vcvars }} | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: "Cache pip" | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~\AppData\Local\pip\Cache | |
| ~\AppData\Local\Programs\Python\Python312\Lib\site-packages | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: "Install MultiQC" | |
| run: pip install '.[dev]' | |
| # NB: Download zip file instead of git clone, as Windows complains about reserved filenames and certain characters | |
| - name: "Download test data" | |
| run: | | |
| curl -fsSL https://github.com/MultiQC/test-data/archive/main.zip -o test-data.zip | |
| 7z x test-data.zip -y -o"test-data" | |
| - run: | | |
| multiqc --strict -v test-data\test-data-main\data\modules\ |