Skip to content

Issues: genomic-medicine-sweden/Twist_Solid

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 7 Closed
22 Open 7 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Missing pureCN PoN for novaseq on figshare enhancement New feature or request
#484 opened Aug 23, 2024 by jonca79
Handling of samples with too few reads (or no reads at all) enhancement New feature or request
#463 opened May 28, 2024 by jfr019
1
faq: add information about error that can occur when reference files are missing documentation Improvements or additions to documentation
#425 opened Mar 4, 2024 by Smeds
faq: add information about error that can occur when bind for singularity are missing documentation Improvements or additions to documentation
#424 opened Mar 4, 2024 by Smeds
Keep the original source of the tumor cell content in the reports enhancement New feature or request
#404 opened Feb 9, 2024 by maehler
Are all pipeline-specific files available in the reference file repo? documentation Improvements or additions to documentation
#391 opened Jan 23, 2024 by maehler
for Snakefile_reference add a step to create pon for HRD enhancement New feature or request
#364 opened Nov 9, 2023 by Smeds
Explain why we do this!
#326 opened Jun 29, 2023 by Smeds
@jonca79
Report chr 7 gains and chr 10 losses enhancement New feature or request
#244 opened Jan 23, 2023 by maehler
Make the max depth variable configurable
#219 opened Nov 17, 2022 by jonca79
CNV Filtrering
#96 opened May 12, 2022 by Smeds
@jonca79
Artifact - hotspot background specific VAF
#95 opened May 12, 2022 by Smeds
@jonca79
QC - control script enhancement New feature or request
#93 opened May 12, 2022 by Smeds
@alvaralmstedt @hannasoderstrom1
Exon skipping caller enhancement New feature or request
#86 opened Apr 28, 2022 by jonca79
6 tasks
Migrate RNA
@jonca79
Generate reports enhancement New feature or request
#85 opened Apr 28, 2022 by jonca79
7 tasks
Migrate RNA
@jonca79
QC enhancement New feature or request
#84 opened Apr 28, 2022 by jonca79
7 tasks
Migrate RNA
@Smeds @jonca79
ID SNPs enhancement New feature or request
#82 opened Apr 28, 2022 by jonca79
7 tasks
Migrate RNA
Fusioncather fusion caller enhancement New feature or request
#81 opened Apr 28, 2022 by jonca79
7 tasks
Migrate RNA
@jonca79
Star fusion caller enhancement New feature or request
#80 opened Apr 28, 2022 by jonca79
8 tasks
Migrate RNA
@Smeds @jonca79
CNV, more callers
#79 opened Apr 28, 2022 by Smeds
Arriba fusion caller enhancement New feature or request
#77 opened Apr 28, 2022 by jonca79
9 tasks
Migrate RNA
1
Add logging and test to add_mosdepth_coverage_to_gvcf
#33 opened Mar 2, 2022 by Smeds
ProTip! Exclude everything labeled bug with -label:bug.