Release 0.3.0 #40
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| name: nf-core CI for master | |
| # Run the workflow when: | |
| # - dispatched manually | |
| # - when a PR is opened or reopened to master branch | |
| # - the head branch of the pull request is updated, i.e. if fixes for a release are pushed last minute to dev. | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| testbranch: | |
| description: "The specific branch you wish to utilize for the test execution." | |
| required: true | |
| default: "dev" | |
| pull_request: | |
| types: | |
| - opened | |
| - edited | |
| - synchronize | |
| branches: | |
| - master | |
| pull_request_target: | |
| branches: | |
| - master | |
| env: | |
| NXF_ANSI_LOG: false | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| test-no-bed: | |
| name: Run pipeline with test data with no BED | |
| # Only run on push if this is the nf-core dev branch (merged PRs) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| parameters: | |
| - "--bed=`null`" | |
| NXF_VER: | |
| - "23.04.0" | |
| - "latest-everything" | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: "${{ matrix.NXF_VER }}" | |
| - name: Disk space cleanup | |
| uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 | |
| - name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results ${{ matrix.parameters }} |