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Filter SNVs, INDELs, CNVs and SVs #1519

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Filter SNVs, INDELs, CNVs and SVs

Filter SNVs, INDELs, CNVs and SVs #1519

Triggered via pull request November 18, 2024 10:22
@fellen31fellen31
synchronize #496
fellen31:filter-variants
Status Cancelled
Total duration 1m 8s
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ci.yml

on: pull_request
Matrix: test
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21 errors and 9 warnings
SNV_ANNOTATION | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
SHORT_VARIANT_CALLING | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
SHORT_VARIANT_CALLING | docker | NF-latest-everything
The operation was canceled.
samplesheet_multisample_bam | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet_multisample_bam | docker | NF-latest-everything
The operation was canceled.
METHYLATION | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
METHYLATION | docker | NF-latest-everything
The operation was canceled.
samplesheet | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet | docker | NF-latest-everything
A task was canceled.
RANK_VARIANTS | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
RANK_VARIANTS | docker | NF-latest-everything
The operation was canceled.
CALL_SVS | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
CALL_SVS | docker | NF-latest-everything
The operation was canceled.
samplesheet_multisample_ont_bam | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet_multisample_ont_bam | docker | NF-24.04.2
The operation was canceled.
samplesheet_multisample_bam | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet_multisample_bam | docker | NF-24.04.2
The operation was canceled.
samplesheet_multisample_ont_bam | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet_multisample_ont_bam | docker | NF-latest-everything
The operation was canceled.
samplesheet | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-496' exists
samplesheet | docker | NF-24.04.2
The operation was canceled.
ANNOTATE_SVS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
RANK_VARIANTS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
METHYLATION | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SHORT_VARIANT_CALLING | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_SVS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SNV_ANNOTATION | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/