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Fix parallel alignments in CI tests (#323)
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fellen31 authored Aug 15, 2024
1 parent cc6d26a commit 1f15553
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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -28,7 +28,7 @@ jobs:
matrix:
parameters:
- ""
- "--preset ONT_R10 --input https://github.com/genomic-medicine-sweden/test-datasets/raw/e2266a34c14d1e0a9ef798de3cd81a76c9216fc1/testdata/samplesheet_multisample_bam_ont.csv --parallel_alignment 2 --parallel_snv 1"
- "--preset ONT_R10 --input https://github.com/genomic-medicine-sweden/test-datasets/raw/e2266a34c14d1e0a9ef798de3cd81a76c9216fc1/testdata/samplesheet_multisample_bam_ont.csv --parallel_alignments 2 --parallel_snv 1"
NXF_VER:
- "23.04.0"
- "latest-everything"
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -64,6 +64,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#314](https://github.com/genomic-medicine-sweden/nallo/pull/314) - Changed VEP annotation added in #244 to not include SpliceAI
- [#317](https://github.com/genomic-medicine-sweden/nallo/pull/317) - Changed so that `--reduced_penetrance` and `--score_config_snv` is required by rank variants and not SNV annotation
- [#321](https://github.com/genomic-medicine-sweden/nallo/pull/321) - Changed the input to BUILD_INTERVALS to have `meta.id` when building intervals from reference
- [#323](https://github.com/genomic-medicine-sweden/nallo/pull/323) - Changed `parallel_alignment` to `parallel_alignments` in CI tests as well

### `Removed`

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