Remove integration test

As discussed in #34, it is not feasible to get an integration to work as a part of Github Actions.
genomic-medicine-sweden · Aug 23, 2023 · 1452de2 · 1452de2
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Showing 25 changed files with 1 addition and 1,846 deletions.
diff --git a/.github/workflows/integration1.yaml b/.github/workflows/integration1.yaml
diff --git a/.tests/integration/config/config.yaml b/.tests/integration/config/config.yaml
diff --git a/.tests/integration/config/multiqc.yaml b/.tests/integration/config/multiqc.yaml
diff --git a/.tests/integration/config/output_files.yaml b/.tests/integration/config/output_files.yaml
diff --git a/.tests/integration/config/resources.yaml b/.tests/integration/config/resources.yaml
diff --git a/.tests/integration/data/bed/design.bed b/.tests/integration/data/bed/design.bed
diff --git a/.tests/integration/data/bed/design.intervals b/.tests/integration/data/bed/design.intervals
diff --git a/.tests/integration/data/bed/pindel_regions.bed b/.tests/integration/data/bed/pindel_regions.bed
diff --git a/.tests/integration/data/cnvkit/cnvkit_pon.cnn b/.tests/integration/data/cnvkit/cnvkit_pon.cnn
diff --git a/.tests/integration/data/gatk/gnomad_SNP_0.001_target.annotated.interval_list b/.tests/integration/data/gatk/gnomad_SNP_0.001_target.annotated.interval_list
diff --git a/.tests/integration/data/gatk/pon.hdf5 b/.tests/integration/data/gatk/pon.hdf5
diff --git a/.tests/integration/data/vep_cache/empty.txt b/.tests/integration/data/vep_cache/empty.txt
diff --git a/.tests/integration/fastq/HD829_R1.fastq.gz b/.tests/integration/fastq/HD829_R1.fastq.gz
diff --git a/.tests/integration/fastq/HD829_R2.fastq.gz b/.tests/integration/fastq/HD829_R2.fastq.gz
diff --git a/.tests/integration/reference/FLT3.dict b/.tests/integration/reference/FLT3.dict