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Issues list

Fastp filtering enhancement New feature or request
#43 opened Jun 10, 2024 by sofstam
ribodector to remove rRNA before classification enhancement New feature or request
#42 opened Mar 25, 2024 by LilyAnderssonLee
2
Validate the latest versions of databases enhancement New feature or request
#41 opened Jan 30, 2024 by LilyAnderssonLee
1 of 11 tasks
1
Report the common contaminants in routine pipeline enhancement New feature or request
#40 opened Jan 22, 2024 by LilyAnderssonLee
Standardize the update of databases and taxonomy enhancement New feature or request
#39 opened Jan 22, 2024 by LilyAnderssonLee
Build centrifuge db enhancement New feature or request
#38 opened Jan 16, 2024 by sofstam Release 2
Build krakenuniq db enhancement New feature or request
#37 opened Jan 16, 2024 by sofstam Release 1
Build centrifuge database enhancement New feature or request
#36 opened Nov 17, 2023 by LilyAnderssonLee
@LilyAnderssonLee
1
(feat centrifuge) hitLength and numMatches enhancement New feature or request low priority
#35 opened Sep 25, 2023 by sofstam
Test KrakenUniq bug Something isn't working
#34 opened Aug 16, 2023 by sofstam Release 1
@sofstam
1
Construct databases for all profilers from the same input refseq data
#33 opened Aug 14, 2023 by LilyAnderssonLee
2 of 7 tasks
1
Test kmcp classifier enhancement New feature or request
#32 opened Aug 14, 2023 by sofstam
Confidence score in Kraken2
#31 opened Aug 14, 2023 by LilyAnderssonLee
@LilyAnderssonLee
1
Test the profiler Kaiju enhancement New feature or request
#29 opened Aug 9, 2023 by LilyAnderssonLee Release 1
@LilyAnderssonLee
2
Test CENTRIFUGE with classification filterings, and compare centrifuge to Kraken2 enhancement New feature or request
#28 opened Aug 8, 2023 by LilyAnderssonLee
@LilyAnderssonLee
5
Test DIAMOND enhancement New feature or request
#27 opened Aug 8, 2023 by LilyAnderssonLee Release 2
@LilyAnderssonLee
7
GMS-Mikro Viruspool enhancement New feature or request
#25 opened Aug 8, 2023 by sofstam
@sofstam
Test profiler ganon enhancement New feature or request
#22 opened Aug 8, 2023 by sofstam
@LilyAnderssonLee
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