Update GENOME_ASSEMBLY for mus_musculus to GRCm39 (#14)

googlegenomics · Jun 4, 2021 · f36a301 · f36a301
1 parent 2d324c0
commit f36a301
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/batch/vep/build_vep_cache.sh b/batch/vep/build_vep_cache.sh
@@ -35,7 +35,7 @@ set -euo pipefail
 
 readonly release="${ENSEMBL_RELEASE:-104}"
 readonly species="${VEP_SPECIES:-homo_sapiens}" # or "${VEP_SPECIES:-mus_musculus}"
-readonly assembly="${GENOME_ASSEMBLY:-GRCh38}" # or "${GENOME_ASSEMBLY:-GRCh37}" for homo_sapiens or "${GENOME_ASSEMBLY:-GRCm38}" for mus_musculus
+readonly assembly="${GENOME_ASSEMBLY:-GRCh38}" # or "${GENOME_ASSEMBLY:-GRCh37}" for homo_sapiens or "${GENOME_ASSEMBLY:-GRCm39}" for mus_musculus
 readonly work_dir="vep_cache"
 
 mkdir -p "${work_dir}"