update dependencies for ubuntu-latest/py3.9

requirements/ubuntu-latest_py3.9.txt

@@ -4,27 +4,25 @@
 #
 #    pip-compile --output-file=requirements/ubuntu-latest_py3.9.txt
 #
-certifi==2023.7.22
+certifi==2023.11.17
     # via requests
-charset-normalizer==3.2.0
+charset-normalizer==3.3.2
     # via requests
-contourpy==1.1.0
+contourpy==1.2.0
     # via matplotlib
-cycler==0.11.0
+cycler==0.12.1
     # via matplotlib
 dnspython==2.4.2
     # via pymongo
-emmet-core==0.67.5
-    # via mp-api
-fonttools==4.42.1
+fonttools==4.46.0
     # via matplotlib
 future==0.18.3
     # via
     #   matminer (setup.py)
     #   uncertainties
-idna==3.4
+idna==3.6
     # via requests
-importlib-resources==6.0.1
+importlib-resources==6.1.1
     # via matplotlib
 joblib==1.3.2
     # via
@@ -34,23 +32,17 @@ kiwisolver==1.4.5
     # via matplotlib
 latexcodec==2.0.1
     # via pybtex
-matplotlib==3.7.2
+matplotlib==3.8.2
     # via pymatgen
-monty==2023.9.5
+monty==2023.11.3
     # via
-    #   emmet-core
     #   matminer (setup.py)
-    #   mp-api
     #   pymatgen
-mp-api==0.35.1
-    # via pymatgen
 mpmath==1.3.0
     # via sympy
-msgpack==1.0.5
-    # via mp-api
-networkx==3.1
+networkx==3.2.1
     # via pymatgen
-numpy==1.25.2
+numpy==1.26.2
     # via
     #   contourpy
     #   matminer (setup.py)
@@ -60,36 +52,27 @@ numpy==1.25.2
     #   scikit-learn
     #   scipy
     #   spglib
-packaging==23.1
+packaging==23.2
     # via
     #   matplotlib
     #   plotly
 palettable==3.3.3
     # via pymatgen
-pandas==2.1.0
+pandas==2.1.3
     # via
     #   matminer (setup.py)
     #   pymatgen
-pillow==10.0.0
+pillow==10.1.0
     # via matplotlib
-plotly==5.16.1
+plotly==5.18.0
     # via pymatgen
 pybtex==0.24.0
-    # via
-    #   emmet-core
-    #   pymatgen
-pydantic==1.10.12
-    # via
-    #   emmet-core
-    #   pymatgen
-pymatgen==2023.9.2
-    # via
-    #   emmet-core
-    #   matminer (setup.py)
-    #   mp-api
-pymongo==4.5.0
+    # via pymatgen
+pymatgen==2023.11.12
+    # via matminer (setup.py)
+pymongo==4.6.1
     # via matminer (setup.py)
-pyparsing==3.0.9
+pyparsing==3.1.1
     # via matplotlib
 python-dateutil==2.8.2
     # via
@@ -102,15 +85,14 @@ pyyaml==6.0.1
 requests==2.31.0
     # via
     #   matminer (setup.py)
-    #   mp-api
     #   pymatgen
-ruamel-yaml==0.17.32
+ruamel-yaml==0.18.5
     # via pymatgen
-ruamel-yaml-clib==0.2.7
+ruamel-yaml-clib==0.2.8
     # via ruamel-yaml
-scikit-learn==1.3.0
+scikit-learn==1.3.2
     # via matminer (setup.py)
-scipy==1.11.2
+scipy==1.11.4
     # via
     #   pymatgen
     #   scikit-learn
@@ -119,10 +101,8 @@ six==1.16.0
     #   latexcodec
     #   pybtex
     #   python-dateutil
-spglib==2.0.2
-    # via
-    #   emmet-core
-    #   pymatgen
+spglib==2.1.0
+    # via pymatgen
 sympy==1.12
     # via
     #   matminer (setup.py)
@@ -137,19 +117,11 @@ tqdm==4.66.1
     # via
     #   matminer (setup.py)
     #   pymatgen
-typing-extensions==4.7.1
-    # via
-    #   emmet-core
-    #   mp-api
-    #   pydantic
 tzdata==2023.3
     # via pandas
 uncertainties==3.1.7
     # via pymatgen
-urllib3==2.0.4
+urllib3==2.1.0
     # via requests
-zipp==3.16.2
+zipp==3.17.0
     # via importlib-resources
-
-# The following packages are considered to be unsafe in a requirements file:
-# setuptools