update dependencies for ubuntu-latest/py3.8

requirements/ubuntu-latest_py3.8.txt

@@ -6,25 +6,25 @@
 #
 certifi==2023.7.22
     # via requests
-charset-normalizer==3.2.0
+charset-normalizer==3.3.0
     # via requests
-contourpy==1.1.0
+contourpy==1.1.1
     # via matplotlib
-cycler==0.11.0
+cycler==0.12.1
     # via matplotlib
 dnspython==2.4.2
     # via pymongo
-emmet-core==0.67.5
+emmet-core==0.68.0
     # via mp-api
-fonttools==4.42.1
+fonttools==4.43.1
     # via matplotlib
 future==0.18.3
     # via
     #   matminer (setup.py)
     #   uncertainties
 idna==3.4
     # via requests
-importlib-resources==6.0.1
+importlib-resources==6.1.0
     # via matplotlib
 joblib==1.3.2
     # via
@@ -34,9 +34,9 @@ kiwisolver==1.4.5
     # via matplotlib
 latexcodec==2.0.1
     # via pybtex
-matplotlib==3.7.2
+matplotlib==3.7.3
     # via pymatgen
-monty==2023.9.5
+monty==2023.9.25
     # via
     #   emmet-core
     #   matminer (setup.py)
@@ -46,7 +46,7 @@ mp-api==0.35.1
     # via pymatgen
 mpmath==1.3.0
     # via sympy
-msgpack==1.0.5
+msgpack==1.0.7
     # via mp-api
 networkx==3.1
     # via pymatgen
@@ -60,7 +60,7 @@ numpy==1.24.4
     #   scikit-learn
     #   scipy
     #   spglib
-packaging==23.1
+packaging==23.2
     # via
     #   matplotlib
     #   plotly
@@ -70,15 +70,15 @@ pandas==2.0.3
     # via
     #   matminer (setup.py)
     #   pymatgen
-pillow==10.0.0
+pillow==10.1.0
     # via matplotlib
-plotly==5.16.1
+plotly==5.17.0
     # via pymatgen
 pybtex==0.24.0
     # via
     #   emmet-core
     #   pymatgen
-pydantic==1.10.12
+pydantic==1.10.13
     # via
     #   emmet-core
     #   pymatgen
@@ -89,7 +89,7 @@ pymatgen==2023.8.10
     #   mp-api
 pymongo==4.5.0
     # via matminer (setup.py)
-pyparsing==3.0.9
+pyparsing==3.1.1
     # via matplotlib
 python-dateutil==2.8.2
     # via
@@ -104,11 +104,11 @@ requests==2.31.0
     #   matminer (setup.py)
     #   mp-api
     #   pymatgen
-ruamel-yaml==0.17.32
+ruamel-yaml==0.17.35
     # via pymatgen
-ruamel-yaml-clib==0.2.7
+ruamel-yaml-clib==0.2.8
     # via ruamel-yaml
-scikit-learn==1.3.0
+scikit-learn==1.3.1
     # via matminer (setup.py)
 scipy==1.10.1
     # via
@@ -119,7 +119,7 @@ six==1.16.0
     #   latexcodec
     #   pybtex
     #   python-dateutil
-spglib==2.0.2
+spglib==2.1.0
     # via
     #   emmet-core
     #   pymatgen
@@ -137,7 +137,7 @@ tqdm==4.66.1
     # via
     #   matminer (setup.py)
     #   pymatgen
-typing-extensions==4.7.1
+typing-extensions==4.8.0
     # via
     #   emmet-core
     #   mp-api
@@ -146,9 +146,9 @@ tzdata==2023.3
     # via pandas
 uncertainties==3.1.7
     # via pymatgen
-urllib3==2.0.4
+urllib3==2.0.6
     # via requests
-zipp==3.16.2
+zipp==3.17.0
     # via importlib-resources
 
 # The following packages are considered to be unsafe in a requirements file:

requirements/ubuntu-latest_py3.8_extras.txt

@@ -13,29 +13,29 @@ ase==3.22.1
     #   aflow
     #   dscribe
     #   matminer (setup.py)
-astroid==2.15.6
+astroid==3.0.1
     # via pylint
 attrs==23.1.0
     # via
     #   jsonschema
     #   referencing
-babel==2.12.1
+babel==2.13.0
     # via sphinx
 beautifulsoup4==4.12.2
     # via aflow
-black==23.7.0
+black==23.9.1
     # via matminer (setup.py)
 certifi==2023.7.22
     # via requests
-cffi==1.15.1
+cffi==1.16.0
     # via cryptography
-charset-normalizer==3.2.0
+charset-normalizer==3.3.0
     # via requests
 citrination-client==6.5.1
     # via matminer (setup.py)
 click==8.1.7
     # via black
-contourpy==1.1.0
+contourpy==1.1.1
     # via matplotlib
 coverage[toml]==6.5.0
     # via
@@ -44,11 +44,11 @@ coverage[toml]==6.5.0
     #   pytest-cov
 coveralls==3.3.1
     # via matminer (setup.py)
-cryptography==41.0.3
+cryptography==41.0.4
     # via
     #   globus-sdk
     #   pyjwt
-cycler==0.11.0
+cycler==0.12.1
     # via matplotlib
 dill==0.3.7
     # via pylint
@@ -60,23 +60,23 @@ docutils==0.20.1
     # via sphinx
 dscribe==2.1.0
     # via matminer (setup.py)
-emmet-core==0.67.5
+emmet-core==0.68.0
     # via mp-api
 exceptiongroup==1.1.3
     # via pytest
 fair-research-login==0.3.1
     # via mdf-toolbox
 flake8==6.1.0
     # via matminer (setup.py)
-fonttools==4.42.1
+fonttools==4.43.1
     # via matplotlib
 future==0.18.3
     # via
     #   matminer (setup.py)
     #   uncertainties
 globus-nexus-client==0.4.1
     # via mdf-toolbox
-globus-sdk==3.28.0
+globus-sdk==3.29.0
     # via
     #   fair-research-login
     #   globus-nexus-client
@@ -92,7 +92,7 @@ importlib-metadata==6.8.0
     # via
     #   numba
     #   sphinx
-importlib-resources==6.0.1
+importlib-resources==6.1.0
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -120,13 +120,11 @@ kiwisolver==1.4.5
     # via matplotlib
 latexcodec==2.0.1
     # via pybtex
-lazy-object-proxy==1.9.0
-    # via astroid
-llvmlite==0.40.1
+llvmlite==0.41.0
     # via numba
 markupsafe==2.1.3
     # via jinja2
-matplotlib==3.7.2
+matplotlib==3.7.3
     # via
     #   ase
     #   pymatgen
@@ -138,7 +136,7 @@ mdf-forge==0.8.0
     # via matminer (setup.py)
 mdf-toolbox==0.6.0
     # via mdf-forge
-monty==2023.9.5
+monty==2023.9.25
     # via
     #   emmet-core
     #   matminer (setup.py)
@@ -148,13 +146,13 @@ mp-api==0.35.1
     # via pymatgen
 mpmath==1.3.0
     # via sympy
-msgpack==1.0.5
+msgpack==1.0.7
     # via mp-api
 mypy-extensions==1.0.0
     # via black
 networkx==3.1
     # via pymatgen
-numba==0.57.1
+numba==0.58.0
     # via sparse
 numpy==1.24.4
     # via
@@ -172,7 +170,7 @@ numpy==1.24.4
     #   scipy
     #   sparse
     #   spglib
-packaging==23.1
+packaging==23.2
     # via
     #   black
     #   matplotlib
@@ -187,13 +185,13 @@ pandas==2.0.3
     #   pymatgen
 pathspec==0.11.2
     # via black
-pillow==10.0.0
+pillow==10.1.0
     # via matplotlib
-platformdirs==3.10.0
+platformdirs==3.11.0
     # via
     #   black
     #   pylint
-plotly==5.16.1
+plotly==5.17.0
     # via pymatgen
 pluggy==1.3.0
     # via pytest
@@ -203,11 +201,11 @@ pybtex==0.24.0
     # via
     #   emmet-core
     #   pymatgen
-pycodestyle==2.11.0
+pycodestyle==2.11.1
     # via flake8
 pycparser==2.21
     # via cffi
-pydantic==1.10.12
+pydantic==1.10.13
     # via
     #   emmet-core
     #   pymatgen
@@ -216,8 +214,10 @@ pyflakes==3.1.0
 pygments==2.16.1
     # via sphinx
 pyjwt[crypto]==2.8.0
-    # via globus-sdk
-pylint==2.17.5
+    # via
+    #   globus-sdk
+    #   pyjwt
+pylint==3.0.1
     # via matminer (setup.py)
 pymatgen==2023.8.10
     # via
@@ -226,22 +226,22 @@ pymatgen==2023.8.10
     #   mp-api
 pymongo==4.5.0
     # via matminer (setup.py)
-pyparsing==3.0.9
+pyparsing==3.1.1
     # via
     #   httplib2
     #   matplotlib
 pypif==2.1.2
     # via citrination-client
 pyrsistent==0.19.3
     # via jsonschema
-pytest==7.4.1
+pytest==7.4.2
     # via
     #   matminer (setup.py)
     #   pytest-cov
     #   pytest-timeout
 pytest-cov==4.1.0
     # via matminer (setup.py)
-pytest-timeout==2.1.0
+pytest-timeout==2.2.0
     # via matminer (setup.py)
 python-dateutil==2.8.2
     # via
@@ -266,11 +266,11 @@ requests==2.31.0
     #   mp-api
     #   pymatgen
     #   sphinx
-ruamel-yaml==0.17.32
+ruamel-yaml==0.17.35
     # via pymatgen
-ruamel-yaml-clib==0.2.7
+ruamel-yaml-clib==0.2.8
     # via ruamel-yaml
-scikit-learn==1.3.0
+scikit-learn==1.3.1
     # via
     #   dscribe
     #   matminer (setup.py)
@@ -295,7 +295,7 @@ soupsieve==2.5
     # via beautifulsoup4
 sparse==0.14.0
     # via dscribe
-spglib==2.0.2
+spglib==2.1.0
     # via
     #   emmet-core
     #   pymatgen
@@ -338,7 +338,7 @@ tqdm==4.66.1
     #   matminer (setup.py)
     #   mdf-forge
     #   pymatgen
-typing-extensions==4.7.1
+typing-extensions==4.8.0
     # via
     #   astroid
     #   black
@@ -353,11 +353,9 @@ ujson==5.8.0
     # via matminer (setup.py)
 uncertainties==3.1.7
     # via pymatgen
-urllib3==2.0.4
+urllib3==2.0.6
     # via requests
-wrapt==1.15.0
-    # via astroid
-zipp==3.16.2
+zipp==3.17.0
     # via
     #   importlib-metadata
     #   importlib-resources