HERD name change #482
Workflow file for this run
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name: Run HDMF-Zarr tests | |
on: | |
pull_request: | |
schedule: | |
- cron: '0 5 * * *' # once per day at midnight ET | |
workflow_dispatch: | |
jobs: | |
run-tests: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Cancel non-latest runs | |
uses: styfle/[email protected] | |
with: | |
all_but_latest: true | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: 'recursive' | |
fetch-depth: 0 # tags are required for versioneer to determine the version | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Update pip | |
run: python -m pip install --upgrade pip | |
- name: Clone HDMF-Zarr and install dev branch of HDMF | |
run: | | |
python -m pip list | |
git clone https://github.com/hdmf-dev/hdmf-zarr.git --recurse-submodules | |
cd hdmf-zarr | |
python -m pip install -r requirements-dev.txt -r requirements.txt | |
# must install in editable mode for coverage to find sources | |
python -m pip install -e . # this will install a pinned version of hdmf instead of the current one | |
cd .. | |
python -m pip uninstall -y hdmf # uninstall the pinned version of hdmf | |
python -m pip install . # reinstall current branch of hdmf | |
python -m pip list | |
- name: Run HDMF-Zarr tests on HDMF-Zarr dev branch | |
run: | | |
cd hdmf-zarr | |
pytest |