Merge pull request #339 from VisLab/develop

Starting to develop a comprehensive HED examples
hed-standard · Dec 29, 2023 · a4b0168 · a4b0168
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diff --git a/datasets/eeg_ds003645s_hed_demo/CHANGES b/datasets/eeg_ds003645s_hed_demo/CHANGES
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+1.0.0 2021-05-11
+  - First release
+Revision history for Face Recognition experiment by Wakeman-Henson
+
+version 1.0 - April 2021
+ - Initial release of EEG data in this experiment for HED education purposes
diff --git a/datasets/eeg_ds003645s_hed_demo/README b/datasets/eeg_ds003645s_hed_demo/README
@@ -0,0 +1,21 @@
+## Introduction
+This dataset is derived from a number of other datasets, but particularly ds003645 from openNeuro.
+The purpose of the dataset is to demonstrate how to use HED in various ways.
+
+| Topic | Description |
+| ----- | ------- |
+| [Sidecar] | How to use a sidecar. |
+
+### Basic use of sidecar 
+
+
+### Use of the HED column
+
+### Use of inheritance
+
+### Use of curly braces
+
+
+### Use of long form
+
+### Use in
diff --git a/datasets/eeg_ds003645s_hed_demo/dataset_description.json b/datasets/eeg_ds003645s_hed_demo/dataset_description.json
@@ -0,0 +1,27 @@
+{
+    "Name": "Face processing MEEG dataset with HED annotation",
+    "BIDSVersion": "1.8.0",
+    "HEDVersion": "8.1.0",
+    "License": "CC0",
+    "Authors": [
+        "Daniel G. Wakeman",
+        "Richard N Henson",
+        "Dung Truong (curation)",
+        "Kay Robbins (curation)",
+        "Scott Makeig (curation)",
+        "Arno Delorme (curation)"
+    ],
+    "ReferencesAndLinks": [
+        "Wakeman, D., Henson, R. (2015). A multi-subject, multi-modal human neuroimaging dataset. Sci Data 2, 150001. https://doi.org/10.1038/sdata.2015.1",
+        "Robbins, K., Truong, D., Appelhoff, S., Delorme, A., & Makeig, S. (2021). Capturing the nature of events and event context using Hierarchical Event Descriptors (HED). In press for NeuroImage Special Issue Practice in MEEG. NeuroImage 245 (2021) 118766. Online: https://www.sciencedirect.com/science/article/pii/S1053811921010387.",
+        "Robbins, K., Truong, D., Jones, A., Callanan, I., & Makeig, S. (2021). Building FAIR functionality: Annotating events in time series data using Hierarchical Event Descriptors (HED). Neuroinformatics Special Issue Building the NeuroCommons. Neuroinformatics https://doi.org/10.1007/s12021-021-09537-4. Online: https://link.springer.com/article/10.1007/s12021-021-09537-4."
+    ],
+    "Funding": [
+        "Experiment was supported by the UK Medical Research Council (MC_A060_5PR10) and Elekta Ltd.",
+        "Curation was supported by:  NIH R01 EB023297-03, NIH R01 NS047293-l4, NIH R24 MH120037-01, and R01 MH126700-01A1."
+    ],
+    "DatasetDOI": "10.18112/openneuro.ds003645.v2.0.2",
+	"EthicsApprovals": [
+	    "The study was approved by Cambridge University Psychological Ethics Committee. Written informed consent was obtained from each participant prior to and following each phase of the experiment."
+	]
+}
diff --git a/datasets/eeg_ds003645s_hed_demo/participants.json b/datasets/eeg_ds003645s_hed_demo/participants.json
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+{
+  "participant_id": {
+    "LongName": "Participant identifier",
+    "Description": "Unique subject identifier"
+  },
+  "sex": {
+    "Description": "Sex of the subject",
+    "Levels": {
+      "M": "male",
+      "F": "female"
+    },
+    "HED": {
+      "M": "Male",
+      "F": "Female"
+    }
+  },
+  "age": {
+    "Description": "Age of the subject",
+    "Units": "years"
+  }
+}
diff --git a/datasets/eeg_ds003645s_hed_demo/participants.tsv b/datasets/eeg_ds003645s_hed_demo/participants.tsv
@@ -0,0 +1,3 @@
+participant_id	age	sex	HED
+sub-002	31	M	Healthy,Rested,Novice-level
+sub-003	25	M	Healthy,Drowsy,Expert-level
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diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u066.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u066.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u069.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u069.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u070.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u070.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u074.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u074.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u077.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u077.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u079.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u079.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u083.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u083.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u084.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u084.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u086.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u086.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u088.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u088.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u089.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u089.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u091.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u091.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u095.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u095.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u097.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u097.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u098.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u098.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u100.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u100.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u103.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u103.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u106.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u106.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u111.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u111.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u112.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u112.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u113.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u113.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u117.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u117.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u120.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u120.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u123.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u123.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u124.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u124.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u127.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u127.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u128.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u128.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u131.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u131.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u132.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u132.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u134.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u134.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u139.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u139.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u140.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u140.bmp
diff --git a/datasets/eeg_ds003645s_hed_demo/stimuli/u143.bmp b/datasets/eeg_ds003645s_hed_demo/stimuli/u143.bmp