Add the possibylity to run med_to_pc in batch mode on 1 dir of files

README.rst

@@ -155,11 +155,35 @@ Data organisation
 -------------------
 
 The file is just an output of MedAssociate software.
-The path directorie must contains the sub_directories of sessions that containing
-the raw data files and returns a csv file.
+The path directorie can contains the sub_directories of sessions that containing
+the raw data files, or just Medassociate files.
+
    .. warning:: 
       Your raw data directories must only contain med output files.
 
+Example of data organisation for batch run
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. note:: 
+
+   Experiment directorie/
+   └── dir 01
+      ├── file_med_associates_to_compil
+      ├── file_med_associates_to_compil
+      └── file_med_associates_to_compil
+   └── dir 02
+      ├── file_med_associates_to_compil
+      ├── file_med_associates_to_compil
+      └── file_med_associates_to_compil
+
+   or
+
+   Experiment directorie/
+   ├── file_med_associates_to_compil
+   ├── file_med_associates_to_compil
+   └── file_med_associates_to_compil
+
+
 
 Example
 -----------------
@@ -317,6 +341,7 @@ Acknowledgments
 * `Université de Poitiers <https://univ-poitiers.fr>`_
 * `INSERM <https://inserm.fr>`_
 * `Logo FreeVector.com <https://www.freevector.com/smiling-rat-logo>`_
+*  Thanks to our old contributors as Ekter, Myriam Hanna.
 
 .. raw:: html
 

med_to_csv/expe_med_to_csv.py

@@ -43,6 +43,9 @@ def main(path: str, output_file: str, opt:Dict)->pd.DataFrame:
                         raise RuntimeError(
                             f"""You have chosen to stop the execution after the following error:
                             {err}""") from err
+            elif ptah.isfile(f"{path}/{listd[i]}") :
+                output_df = read_path(f"{path}/", opt)
+                break
             else :
                 print(f"""The file {listd[i]} won't be analyzed""")
     except FileNotFoundError as e: