Unit Test Compatibility #153
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name: Unit Test Compatibility | |
on: | |
# push: | |
# branches: [main] | |
pull_request: | |
branches: [main] | |
schedule: | |
- cron: '0 0 * * *' # daily | |
workflow_dispatch: | |
pull_request_target: | |
types: [opened, synchronize, reopened] | |
jobs: | |
test: | |
runs-on: ubuntu-latest # TODO: make this `["ubuntu-latest", "windows-latest", "macos-latest"]`? | |
strategy: | |
matrix: | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install core PyHC packages # Install all dependencies listed in pyproject.toml | |
run: | | |
python -m pip install --upgrade pip | |
pip install . | |
- name: Clone and test hapiclient | |
run: | | |
git clone https://github.com/hapi-server/client-python.git | |
cd client-python | |
pip install hapiplot deepdiff | |
pytest | |
# Kamodo package has no unit tests | |
# - name: Clone and test kamodo | |
# run: | | |
# git clone https://github.com/nasa/Kamodo.git | |
# cd Kamodo | |
# pip install -r requirements.txt | |
# # pip install . | |
# pytest | |
- name: Clone and test plasmapy | |
if: matrix.python-version != '3.9' # Exclude PlasmaPy for Python 3.9 | |
run: | | |
git clone https://github.com/PlasmaPy/PlasmaPy.git | |
cd PlasmaPy | |
pip install hypothesis | |
# Ignoring tests that are throwing errors & failures | |
# pytest --continue-on-collection-errors -k "not test_detector_stacks and not test_synthetic_radiography and not test_atomic and not test_particle_tracker and not test_save_routines and not test_downloader and not test_Particle_class[neutron-kwargs0-expected_dict0] and not test_Particle_class[p+-kwargs1-expected_dict1] and not test_Particle_class[H-kwargs2-expected_dict2] and not test_Particle_class[e--kwargs5-expected_dict5] and not test_custom_particle_str[kwargs1-I2] and not test_isotopes_have_equivalent_ionization_energy and not test_different_ions_have_different_ionization_energy and not test_zero_charge_ionization_energy and not test_deuterium_ionization_energy and not test_particle_ionization_energy[H-expected_ionization_energy0] and not test_particle_ionization_energy[He-expected_ionization_energy1] and not test_particle_ionization_energy[Li-expected_ionization_energy2] and not test_undefined_ionization_energy and not test_undefined_electron_binding_energy and not test_warning_on_use_of_binding_energy and not test_deuterium_electron_binding_energy and not test_other_isotopes_electron_binding_energy and not test_isotope_ion_electron_binding_energy" | |
pytest --continue-on-collection-errors \ | |
-k "not test_detector_stacks and not test_synthetic_radiography and not test_atomic and not test_particle_tracker and not test_save_routines and not test_downloader and not test_Particle_class[neutron-kwargs0-expected_dict0] and not test_Particle_class[p+-kwargs1-expected_dict1] and not test_Particle_class[H-kwargs2-expected_dict2] and not test_Particle_class[e--kwargs5-expected_dict5] and not test_custom_particle_str[kwargs1-I2] and not test_isotopes_have_equivalent_ionization_energy and not test_different_ions_have_different_ionization_energy and not test_zero_charge_ionization_energy and not test_deuterium_ionization_energy and not test_particle_ionization_energy[H-expected_ionization_energy0] and not test_particle_ionization_energy[He-expected_ionization_energy1] and not test_particle_ionization_energy[Li-expected_ionization_energy2] and not test_undefined_ionization_energy and not test_undefined_electron_binding_energy and not test_warning_on_use_of_binding_energy and not test_deuterium_electron_binding_energy and not test_other_isotopes_electron_binding_energy and not test_isotope_ion_electron_binding_energy and not test_angular_freq_to_hz_preserves_signature and not test_validate_quantities_postponed_annotations and not test_hollweg_ and not test_radiation and not test_decorators and not test_ionization_state" \ | |
--ignore=tests/diagnostics/charged_particle_radiography/test_detector_stacks.py \ | |
--ignore=tests/diagnostics/charged_particle_radiography/test_synthetic_radiography.py \ | |
--ignore=tests/particles/test_atomic.py \ | |
--ignore=tests/simulation/test_particle_tracker.py \ | |
--ignore=tests/simulation/test_save_routines.py \ | |
--ignore=tests/utils/data/test_downloader.py \ | |
--ignore=tests/formulary/collisions/test_collisions_misc.py | |
# pysat always fails with "error in Sphinx setup command: use_2to3 is invalid." | |
# - name: Clone and test pysat | |
# continue-on-error: true | |
# run: | | |
# git clone https://github.com/pysat/pysat.git | |
# cd pysat | |
# pip install -r requirements.txt | |
# pip install -r test_requirements.txt | |
# pytest | |
- name: Clone and test pyspedas | |
run: | | |
git clone https://github.com/spedas/pyspedas.git | |
cd pyspedas | |
pip install -r requirements.txt | |
pip install mth5 | |
# Ignore 6 known failing tests, for now | |
pytest -k "not test_degpol and not test_elliptict and not test_helict and not test_powspec and not test_waveangle and not test_read_epde_calibration_data" | |
- name: Clone and test spacepy | |
run: | | |
git clone https://github.com/spacepy/spacepy.git | |
cd spacepy/tests | |
# python test_all.py | |
# Manually run all test files except 5 that cause problems | |
python test_ae9ap9.py | |
python test_base.py | |
python test_coordinates.py | |
python test_ctrans.py | |
python test_data_assimilation.py | |
python test_datamanager.py | |
python test_igrf.py | |
# python test_irbempy.py | |
python test_lanlstar.py | |
python test_lib.py | |
python test_omni.py | |
python test_plot.py | |
python test_plot_utils.py | |
python test_poppy.py | |
python test_pybats.py | |
python test_rst.py | |
python test_seapy.py | |
python test_spectrogram.py | |
python test_testing.py | |
python test_time.py | |
# python test_toolbox.py | |
# SunPy always fails with "pytest: error: unrecognized arguments: --doctest-rst --dist --arraydiff" | |
# - name: Clone and test sunpy | |
# continue-on-error: true | |
# run: | | |
# git clone https://github.com/sunpy/sunpy.git | |
# cd sunpy | |
# # Extract dependencies from pyproject.toml | |
# python -c "import tomli; f=open('pyproject.toml', 'rb'); pyproject=tomli.load(f); f.close(); dependencies=pyproject.get('project', {}).get('dependencies', []); req_file=open('req_file.txt', 'w'); req_file.write('\n'.join(dependencies)); req_file.close()" | |
# pip install -r req_file.txt | |
# pytest |