iCAT-data

Partial dataset repository for iCAT-workflow.

Datasets

pancreas

Serial sections of rat pancreas tissue (partial dataset) [1].

Stacks

• AF594 (insulin)
• Hoechst
• Low-magnification EM
• High-magnification EM

Full dataset visualization

• Nanotomy
• CATMAID

Organization

┌ pancreas (project)
├──┬ AF594 (stack)
│  ├──┬ S004 (section --> z)
│  │  └── insulin-00001x00001.tif
│  ├─── S005
│  ├─── S006
│  └─── S007
├─── Hoechst
├─── EM_lomag
└──┬ EM_himag
   ├──┬ S004
   │  ├── lil_EM-00002x00002.tif
   │  ├── lil_EM-00002x00003.tif
   │  │   ...
   │  ├── lil_EM-00006x00005.tif
   │  └── lil_EM-00006x00006.tif
   ├─── S005
   ├─── S006
   └─── S007

References

1. Lane, Ryan, et al. "Integrated Array Tomography for 3D Correlative Light and Electron Microscopy." Frontiers in Molecular Biosciences 8 (2021).