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bakta.yaml updated
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@iLivius
iLivius authored May 19, 2024
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Showing 1 changed file with 158 additions and 184 deletions.
342 changes: 158 additions & 184 deletions workflow/envs/bakta.yaml
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Expand Up @@ -4,187 +4,161 @@ channels:
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- about-time=4.2.1
- alive-progress=3.0.1
- aragorn=1.2.41
- archspec=0.2.2
- bakta=1.9.1
- biopython=1.83
- blast=2.15.0
- brotli-python=1.1.0
- bzip2=1.0.8
- c-ares=1.26.0
- ca-certificates=2024.2.2
- certifi=2024.2.2
- cffi=1.16.0
- charset-normalizer=3.3.2
- circos=0.69.9
- curl=8.5.0
- diamond=2.1.8
- entrez-direct=16.2
- expat=2.5.0
- font-ttf-dejavu-sans-mono=2.37
- font-ttf-inconsolata=3.000
- font-ttf-source-code-pro=2.038
- font-ttf-ubuntu=0.83
- fontconfig=2.14.2
- fonts-conda-ecosystem=1
- fonts-conda-forge=1
- freetype=2.12.1
- gettext=0.21.1
- giflib=5.2.1
- grapheme=0.6.0
- hmmer=3.4
- icu=70.1
- idna=3.6
- infernal=1.1.4
- isa-l=2.31.0
- jpeg=9e
- keyutils=1.6.1
- krb5=1.21.2
- ld_impl_linux-64=2.40
- lerc=4.0.0
- libblas=3.9.0
- libcblas=3.9.0
- libcurl=8.5.0
- libdeflate=1.17
- libedit=3.1.20191231
- libev=4.33
- libexpat=2.5.0
- libffi=3.4.2
- libgcc-ng=13.2.0
- libgd=2.3.3
- libgfortran-ng=13.2.0
- libgfortran5=13.2.0
- libgomp=13.2.0
- libiconv=1.17
- libidn2=2.3.7
- liblapack=3.9.0
- libnghttp2=1.58.0
- libnsl=2.0.1
- libopenblas=0.3.26
- libpng=1.6.42
- libsqlite=3.45.1
- libssh2=1.11.0
- libstdcxx-ng=13.2.0
- libtiff=4.5.0
- libunistring=0.9.10
- libuuid=2.38.1
- libwebp=1.2.4
- libwebp-base=1.2.4
- libxcrypt=4.4.36
- libxml2=2.9.14
- libzlib=1.2.13
- ncbi-amrfinderplus=3.12.8
- ncbi-vdb=3.0.10
- ncurses=6.4
- numpy=1.26.4
- openssl=3.2.1
- ossuuid=1.6.2
- pbzip2=1.1.13
- pcre=8.45
- perl=5.32.1
- perl-alien-build=2.48
- perl-alien-libxml2=0.17
- perl-archive-tar=2.40
- perl-b-cow=0.007
- perl-business-isbn=3.007
- perl-business-isbn-data=20210112.006
- perl-capture-tiny=0.48
- perl-carp=1.50
- perl-clone=0.46
- perl-common-sense=3.75
- perl-compress-raw-bzip2=2.201
- perl-compress-raw-zlib=2.202
- perl-config-general=2.65
- perl-constant=1.33
- perl-digest-perl-md5=1.9
- perl-encode=3.19
- perl-exporter=5.74
- perl-exporter-tiny=1.002002
- perl-extutils-config=0.008
- perl-extutils-helpers=0.026
- perl-extutils-installpaths=0.012
- perl-extutils-makemaker=7.70
- perl-extutils-pl2bat=0.005
- perl-ffi-checklib=0.28
- perl-file-chdir=0.1011
- perl-file-path=2.18
- perl-file-temp=0.2304
- perl-file-which=1.24
- perl-font-ttf=1.06
- perl-gd=2.76
- perl-importer=0.026
- perl-inc-latest=0.500
- perl-io-compress=2.201
- perl-io-string=1.08
- perl-io-zlib=1.14
- perl-json=4.10
- perl-json-xs=2.34
- perl-list-moreutils=0.430
- perl-list-moreutils-xs=0.430
- perl-math-bezier=0.01
- perl-math-round=0.07
- perl-math-vecstat=0.08
- perl-module-build=0.4234
- perl-module-build-tiny=0.039
- perl-module-implementation=0.09
- perl-module-runtime=0.016
- perl-number-format=1.76
- perl-params-validate=1.31
- perl-parent=0.241
- perl-path-tiny=0.124
- perl-pathtools=3.75
- perl-readonly=2.05
- perl-regexp-common=2017060201
- perl-scalar-list-utils=1.63
- perl-scope-guard=0.21
- perl-set-intspan=1.19
- perl-statistics-basic=1.6611
- perl-storable=3.15
- perl-sub-info=0.002
- perl-svg=2.87
- perl-term-table=0.016
- perl-test-fatal=0.016
- perl-test-warnings=0.031
- perl-test2-suite=0.000145
- perl-text-format=0.62
- perl-time-hires=1.9764
- perl-try-tiny=0.31
- perl-types-serialiser=1.01
- perl-uri=5.17
- perl-xml-libxml=2.0207
- perl-xml-namespacesupport=1.12
- perl-xml-parser=2.44_01
- perl-xml-sax=1.02
- perl-xml-sax-base=1.09
- pigz=2.8
- piler-cr=1.06
- pip=24.0
- psutil=5.9.8
- pycparser=2.21
- pyhmmer=0.10.4
- pyrodigal=3.3.0
- pysocks=1.7.1
- python=3.10.13
- python-isal=1.5.3
- python_abi=3.10
- pyyaml=6.0.1
- readline=8.2
- requests=2.31.0
- setuptools=69.0.3
- tk=8.6.13
- trnascan-se=2.0.12
- tzdata=2024a
- urllib3=2.2.0
- wget=1.20.3
- wheel=0.42.0
- xopen=1.9.0
- xz=5.2.6
- yaml=0.2.5
- zlib=1.2.13
- zstandard=0.22.0
- zstd=1.5.5

- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- about-time=4.2.1=pyhd8ed1ab_0
- alive-progress=3.0.1=pyhd8ed1ab_0
- aragorn=1.2.41=h031d066_2
- archspec=0.2.3=pyhd8ed1ab_0
- bakta=1.9.3=pyhdfd78af_0
- biopython=1.83=py310h2372a71_0
- blast=2.15.0=pl5321h6f7f691_1
- brotli-python=1.1.0=py310hc6cd4ac_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.28.1=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py310h2fee648_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- circos=0.69.9=hdfd78af_0
- curl=8.7.1=hca28451_0
- diamond=2.1.8=h43eeafb_0
- entrez-direct=21.6=he881be0_0
- expat=2.6.2=h59595ed_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- giflib=5.2.2=hd590300_0
- grapheme=0.6.0=pyhd8ed1ab_0
- hmmer=3.4=hdbdd923_1
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- infernal=1.1.5=pl5321h031d066_1
- isa-l=2.31.0=hd590300_1
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h55db66e_0
- lerc=4.0.0=h27087fc_0
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=22_linux64_openblas
- libcblas=3.9.0=22_linux64_openblas
- libcurl=8.7.1=hca28451_0
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h77fa898_7
- libgd=2.3.3=h119a65a_9
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=13.2.0=h69a702a_7
- libgfortran5=13.2.0=hca663fb_7
- libgomp=13.2.0=h77fa898_7
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=22_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_h413a1c8_0
- libpng=1.6.43=h2797004_0
- libsqlite=3.45.3=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=hc0a3c3a_7
- libtiff=4.6.0=h1dd3fc0_3
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.4.0=h2c329e2_0
- libwebp-base=1.4.0=hd590300_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.2.13=hd590300_5
- ncbi-amrfinderplus=3.12.8=h283d18e_0
- ncbi-vdb=3.1.0=h4ac6f70_2
- ncurses=6.5=h59595ed_0
- numpy=1.26.4=py310hb13e2d6_0
- openssl=3.3.0=hd590300_0
- pbzip2=1.1.13=h1fcc475_2
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-b-cow=0.007=pl5321hd590300_0
- perl-carp=1.38=pl5321hdfd78af_4
- perl-clone=0.46=pl5321hec16e2b_0
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-config-general=2.65=pl5321hdfd78af_0
- perl-digest-perl-md5=1.9=pl5321hdfd78af_2
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-font-ttf=1.06=pl5321hdfd78af_1
- perl-gd=2.76=pl5321h5b5514e_1
- perl-inc-latest=0.500=pl5321ha770c72_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-string=1.08=pl5321hdfd78af_4
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-math-bezier=0.01=pl5321hdfd78af_2
- perl-math-round=0.07=pl5321hdfd78af_2
- perl-math-vecstat=0.08=pl5321hdfd78af_2
- perl-module-build=0.4234=pl5321ha770c72_0
- perl-module-implementation=0.09=pl5321hdfd78af_3
- perl-module-runtime=0.016=pl5321hdfd78af_2
- perl-number-format=1.76=pl5321hdfd78af_0
- perl-params-validate=1.31=pl5321h031d066_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-readonly=2.05=pl5321hdfd78af_1
- perl-regexp-common=2017060201=pl5321hdfd78af_1
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-set-intspan=1.19=pl5321hdfd78af_2
- perl-statistics-basic=1.6611=pl5321hdfd78af_3
- perl-svg=2.87=pl5321hdfd78af_0
- perl-test-fatal=0.016=pl5321hdfd78af_0
- perl-text-format=0.62=pl5321hdfd78af_0
- perl-time-hires=1.9764=pl5321h031d066_4
- perl-try-tiny=0.31=pl5321hdfd78af_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-xml-parser=2.44_01=pl5321hc3e0081_1003
- pigz=2.8=h2797004_0
- piler-cr=1.06=h4ac6f70_4
- pip=24.0=pyhd8ed1ab_0
- psutil=5.9.8=py310h2372a71_0
- pycparser=2.22=pyhd8ed1ab_0
- pyhmmer=0.10.12=py310h4b81fae_0
- pyrodigal=3.3.0=py310h4b81fae_1
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.14=hd12c33a_0_cpython
- python-isal=1.6.1=py310h2372a71_0
- python-zlib-ng=0.4.3=py310ha5dcb8a_0
- python_abi=3.10=4_cp310
- pyyaml=6.0.1=py310h2372a71_1
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- setuptools=69.5.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- trnascan-se=2.0.12=pl5321h031d066_0
- tzdata=2024a=h0c530f3_0
- urllib3=2.2.1=pyhd8ed1ab_0
- wget=1.21.4=hda4d442_0
- wheel=0.43.0=pyhd8ed1ab_1
- xopen=2.0.1=py310hff52083_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=hd590300_5
- zlib-ng=2.0.7=h0b41bf4_0
- zstandard=0.22.0=py310h1275a96_0
- zstd=1.5.5=hfc55251_0

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