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IH 14NOV2023 pull origin, version to v1.1.1.dev
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ijhoskins committed Nov 14, 2023
2 parents e89d9cf + 50d14ef commit 75429a8
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2 changes: 1 addition & 1 deletion CHANGES.txt
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Expand Up @@ -38,7 +38,7 @@ Release Summary:
1.1.0-dev-multi, September 11, 2023
Added support for simple insertion and deletion calling. Added MAVE-HGVS annotations.

1.1.1-dev, November 14, 2023
1.1.1.dev, November 14, 2023

Fixed bugs in HGVS annotations for single in-frame insertions and MNPs spanning the CDS-3' UTR junction.

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2 changes: 1 addition & 1 deletion docs/satmut_utils_manual.md
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Expand Up @@ -486,7 +486,7 @@ Minimum base quality for either mate of a pair to be considered for variant call
Minimum number of fragments for a candidate variant call. Default 2 (discard singletons).

16. -w, --max\_mnp\_window
Integer window span to search for phased SNPs and call MNPs (default 3). satmut\_utils does not support long-range haplotype calling, which is challenged by exponentially increasing false positive calls with a wider window span.
Integer window span to search for phased SNPs and call MNPs (default 3).

17. -n, --ntrimmed

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