run ruff via nbqa on notebooks #1314

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Run time

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Job	Run time
test (3.9)	7m 1s
test (3.9)	6m 38s
test (3.8, mpi)	1m 10s
test (3.8, mpi)	1m 10s
test (3.10, slurm, slurmctld)	2m 11s
test (3.10, slurm, slurmctld)	2m 11s
test (3.8)	6m 56s
test (3.8)	6m 56s
test (3.10, *)	6m 33s
test (3.10, *)	6m 33s
test (3.9, 1)	6m 43s
test (3.9, 1)	6m 43s
test (3.8, windows-2019)	10m 35s
test (3.8, windows-2019)	10m 35s
test (3.9, macos-14)	6m 29s
test (3.9, macos-14)	6m 29s
test (3.11)	5m 47s
test (3.11)	5m 47s
test (3.12, pre)	8m 45s
test (3.12, pre)	8m 45s
	2h 3m 57s