Change Galea channels 7 and 8 to EMG #10

Workflow file for this run

.github/workflows/run_unix.yml at 83172c1

	name: Run Unix

	on: [push, pull_request]

	jobs:
	RunUnix:
	runs-on: ${{ matrix.os }}

	strategy:
	fail-fast: false
	max-parallel: 4
	matrix:
	os: [ubuntu-20.04, macos-11.0]

	steps:
	# compile and prepare env
	- name: Clone Repository
	uses: actions/checkout@v2
	- name: Set Version
	id: version
	run: if [ $GITHUB_REF_TYPE == "tag" ]; then echo "::set-output name=version::$GITHUB_REF_NAME"; else echo "::set-output name=version::$GITHUB_SHA"; fi
	- name: Check Version
	run: echo ${{ steps.version.outputs.version }}
	- name: Install dotnet
	uses: actions/setup-dotnet@v3
	with:
	dotnet-version: '7.0.x'
	- name: Install Python 3.7
	uses: actions/setup-python@v3
	with:
	python-version: '3.7.7'
	architecture: 'x64'
	- name: Install Python Dependencies
	if: (matrix.os == 'ubuntu-20.04')
	run: \|
	sudo -H apt-get update -y
	sudo -H apt-get install -y python3-setuptools python3-pygments libbluetooth-dev
	env:
	DEBIAN_FRONTEND: noninteractive
	- name: Install Node
	uses: actions/setup-node@v3
	with:
	node-version: 18
	- name: Install Typescript
	run: \|
	npm install -g ts-node
	- name: Install Ninja
	if: (matrix.os == 'macos-11.0')
	uses: seanmiddleditch/gha-setup-ninja@master
	with:
	version: 1.10.2
	- name: Install Julia
	uses: julia-actions/setup-julia@v1
	with:
	version: 1.3.1
	- name: Setup Cmake
	uses: jwlawson/[email protected]
	with:
	cmake-version: '3.21.x'
	- name: Set up JDK 11
	uses: actions/setup-java@v1
	with:
	java-version: 11.0.3
	# build simpleble outside from brainflow because of different deployment targets
	- name: Compile SimpleBLE MacOS
	if: (matrix.os == 'macos-11.0')
	run: \|
	mkdir $GITHUB_WORKSPACE/third_party/SimpleBLE/simpleble/build
	cd $GITHUB_WORKSPACE/third_party/SimpleBLE/simpleble/build
	cmake -G Ninja -DCMAKE_OSX_ARCHITECTURES="arm64;x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release ..
	ninja
	ninja install
	- name: Compile BrainFlow MacOS
	if: (matrix.os == 'macos-11.0')
	run: \|
	mkdir $GITHUB_WORKSPACE/build
	cd $GITHUB_WORKSPACE/build
	cmake -G Ninja -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_ONNX=ON -DBUILD_BLUETOOTH=ON -DBUILD_TESTS=ON -DWARNINGS_AS_ERRORS=ON -DCMAKE_OSX_ARCHITECTURES="arm64;x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET=10.13 -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release ..
	ninja
	ninja install
	env:
	BRAINFLOW_VERSION: ${{ steps.version.outputs.version }}
	- name: Compile BrainFlow Ubuntu
	if: (matrix.os == 'ubuntu-20.04')
	run: \|
	mkdir $GITHUB_WORKSPACE/build
	cd $GITHUB_WORKSPACE/build
	cmake -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_BLUETOOTH=ON -DBUILD_ONNX=ON -DBUILD_TESTS=ON -DWARNINGS_AS_ERRORS=ON -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release ..
	make
	make install
	env:
	BRAINFLOW_VERSION: ${{ steps.version.outputs.version }}
	- name: Compile BrainFlow in ManyLinux
	# bindings in production have to use libraries compiled inside this image!
	if: (matrix.os == 'ubuntu-20.04')
	run: \|
	docker pull dockcross/manylinux2014-x64:20210708-94745ff
	docker run -e BRAINFLOW_VERSION=$BRAINFLOW_VERSION -e GITHUB_WORKSPACE=$GITHUB_WORKSPACE -v $GITHUB_WORKSPACE:$GITHUB_WORKSPACE dockcross/manylinux2014-x64:20210708-94745ff /bin/bash -c "yum install -y bluez-libs-devel dbus-devel && /opt/python/cp36-cp36m/bin/pip3.6 install cmake==3.21.4 && cd $GITHUB_WORKSPACE && mkdir build_docker && cd build_docker && /opt/_internal/cpython-3.6.14/bin/cmake -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_ONNX=ON -DBUILD_BLE=ON -DBUILD_BLUETOOTH=ON -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed_docker -DCMAKE_BUILD_TYPE=Release .. && make && make install"
	env:
	BRAINFLOW_VERSION: ${{ steps.version.outputs.version }}
	- name: C# build
	run: \|
	cd $GITHUB_WORKSPACE/csharp_package/brainflow
	dotnet restore brainflow.sln
	dotnet build brainflow.sln -c Release
	- name: Setup Python Package
	run: \|
	cd $GITHUB_WORKSPACE/python_package
	sudo -H python3 -m pip install -U .
	- name: Build Node Package
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/brainflow
	npm install
	npm run build
	- name: Install Node Tests
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm install
	- name: Setup Java package
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn package
	cp -av $GITHUB_WORKSPACE/java_package/brainflow/target/classes/brainflow/. $GITHUB_WORKSPACE/java_package/brainflow/target/classes/
	cp -av $GITHUB_WORKSPACE/java_package/brainflow/target/classes/brainflow/. $GITHUB_WORKSPACE/java_package/brainflow/target/classes/
	- name: Build Get Data Test
	run: \|
	cd $GITHUB_WORKSPACE/cpp_package/examples/get_data
	mkdir build
	cd build
	cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed ..
	make
	- name: Build Signal Processing Test
	run: \|
	cd $GITHUB_WORKSPACE/cpp_package/examples/signal_processing
	mkdir build
	cd build
	cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed ..
	make
	- name: Build ML Demo Test
	run: \|
	cd $GITHUB_WORKSPACE/cpp_package/examples/ml
	mkdir build
	cd build
	cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed ..
	make
	- name: Install Emulator
	run: \|
	cd $GITHUB_WORKSPACE/emulator
	sudo -H python3 -m pip install -U .
	- name: Install Python test Dependencies
	run: sudo -H python3 -m pip install -r $GITHUB_WORKSPACE/python_package/examples/tests/requirements.txt

	# start testing
	- name: Run unit tests
	run: $GITHUB_WORKSPACE/build/tests/brainflow_tests
	- name: Synthetic C# Test MacOS
	if: (matrix.os == 'macos-11.0')
	run: \|
	cd $GITHUB_WORKSPACE/csharp_package/brainflow/examples/brainflow_get_data/bin/Release/net7.0
	cp $GITHUB_WORKSPACE/installed/lib/libBoardController.dylib $GITHUB_WORKSPACE/csharp_package/brainflow/examples/brainflow_get_data/bin/Release/net7.0/
	./brainflow_get_data --board-id -1
	env:
	DYLD_PRINT_LIBRARIES: 1
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	DYLD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: EEG Metrics C# Test MacOS
	if: (matrix.os == 'macos-11.0')
	run: \|
	cd $GITHUB_WORKSPACE/csharp_package/brainflow/examples/eeg_metrics/bin/Release/net7.0
	cp $GITHUB_WORKSPACE/installed/lib/libBoardController.dylib $GITHUB_WORKSPACE/csharp_package/brainflow/examples/eeg_metrics/bin/Release/net7.0/
	cp $GITHUB_WORKSPACE/installed/lib/libDataHandler.dylib $GITHUB_WORKSPACE/csharp_package/brainflow/examples/eeg_metrics/bin/Release/net7.0/
	cp $GITHUB_WORKSPACE/installed/lib/libMLModule.dylib $GITHUB_WORKSPACE/csharp_package/brainflow/examples/eeg_metrics/bin/Release/net7.0/
	./eeg_metrics --board-id -1
	env:
	DYLD_PRINT_LIBRARIES: 1
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	DYLD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Synthetic C# Test Ubuntu
	if: (matrix.os == 'ubuntu-20.04')
	run: \|
	cd $GITHUB_WORKSPACE/csharp_package/brainflow/examples/brainflow_get_data/bin/Release/net7.0
	./brainflow_get_data --board-id -1
	env:
	DYLD_PRINT_LIBRARIES: 1
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	DYLD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: EEG Metrics C# Test Ubuntu
	if: (matrix.os == 'ubuntu-20.04')
	run: \|
	cd $GITHUB_WORKSPACE/csharp_package/brainflow/examples/eeg_metrics/bin/Release/net7.0
	./eeg_metrics --board-id -1
	env:
	DYLD_PRINT_LIBRARIES: 1
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	DYLD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Run All Julia Tests
	run: \|
	export LD_LIBRARY_PATH=$GITHUB_WORKSPACE/installed/lib:$LD_LIBRARY_PATH
	julia --project=$GITHUB_WORKSPACE/julia_package/brainflow -e "import Pkg; Pkg.test()"
	- name: Cyton Python
	run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id 0 --serial-port
	- name: Cyton Python Commands
	run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/cyton_commands.py --serial-port
	- name: Cyton Python Markers
	run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id 0 --serial-port
	- name: Multiboard Python
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_multiboard_get_data.py --board-id 0 --serial-port
	- name: Cyton Cpp
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id 0 --serial-port
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Synthetic Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id -1
	- name: Synthetic Python Multiple Buffers
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/multiple_buffers.py
	- name: Synthetic Python Multiple Streamers
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/multiple_streamers.py
	- name: Playback Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/playback_test.py
	- name: Synthetic Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id -1
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Synthetic Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.BrainFlowGetData" -Dexec.args="--board-id -1"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Synthetic Java Markers
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.Markers" -Dexec.args="--board-id -1"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Cyton Daisy Python
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id 2 --serial-port
	- name: Cyton Daisy Python Markers
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id 2 --serial-port
	- name: Galea Cpp
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/galea_udp.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id 3 --ip-address 127.0.0.1
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Galea Cpp Markers
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/galea_udp.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/markers --board-id 3 --ip-address 127.0.0.1
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Streaming Python
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/streaming_board_emulator.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id -2 --ip-address 225.1.1.1 --ip-port 6677 --master-board -1
	- name: Streaming Python Markers
	run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/streaming_board_emulator.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id -2 --ip-address 225.1.1.1 --ip-port 6677 --master-board -1
	- name: Denoising Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/denoising.py
	- name: Serialization Python
	run: \|
	cd $GITHUB_WORKSPACE
	sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/serialization.py
	- name: Python Release All
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/release_all.py
	- name: Filters Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/signal_filtering.py
	- name: Transforms Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/transforms.py
	- name: Downsampling Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/downsampling.py
	- name: ICA Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/ica.py
	- name: CSP Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/csp.py
	- name: Windowing Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/windowing.py
	- name: MNE Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_to_mne.py
	- name: BandPower Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/band_power.py
	- name: BandPowerAll Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/band_power_all.py
	- name: Denoising Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/denoising
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Downsampling Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/downsampling
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: CSP Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/csp
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Windowing Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/windowing
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Filters Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/signal_filtering
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Serialization Cpp
	run: \|
	cd $GITHUB_WORKSPACE
	sudo -H $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/serialization
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Transforms Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/transforms
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: BandPower Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/band_power
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Denoising Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.Denoising"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: ICA Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.ICA"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Downsampling Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.Downsampling"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: CSP Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.CSP"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Windowing Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.Windowing"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Transforms Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.Transforms"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: BandPower Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.BandPower"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: EEG Metrics Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/eeg_metrics.py --board-id -1
	- name: EEG Metrics Custom Python
	run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/eeg_metrics_ci.py --board-id -1 --classifier 2 --metric 2 --model-file $GITHUB_WORKSPACE/src/ml/train/logreg_mindfulness.onnx
	- name: EEG Metrics Cpp
	run: $GITHUB_WORKSPACE/cpp_package/examples/ml/build/eeg_metrics --board-id -1
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: EEG Metrics Cpp Dyn Lib
	if: (matrix.os == 'ubuntu-20.04')
	run: $GITHUB_WORKSPACE/cpp_package/examples/ml/build/eeg_metrics_ci --board-id -1 --metric 2 --classifier 1 --model-file $GITHUB_WORKSPACE/cpp_package/examples/ml/build/libdyn_lib_test.so
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: EEG Metrics Java
	run: \|
	cd $GITHUB_WORKSPACE/java_package/brainflow
	mvn exec:java -Dexec.mainClass="brainflow.examples.EEGMetrics" -Dexec.args="--board-id -1"
	env:
	LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib
	- name: Synthetic Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run brainflow_get_data
	- name: Signal Filters Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run signal_filtering
	- name: Serialization Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run serialization
	- name: Downsampling Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run downsampling
	- name: Denoising Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run denoising
	- name: EEG Metrics Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run eeg_metrics
	- name: BandPowerAll Node
	run: \|
	cd $GITHUB_WORKSPACE/nodejs_package/tests
	npm run bandpower_all
	# deploy started
	- name: Install AWS CLI
	run: sudo -H python3 -m pip install awscli==1.21.10
	- name: Push Libraries Linux Docker
	if: ${{ github.event_name == 'push' && matrix.os == 'ubuntu-20.04' && github.repository == 'brainflow-dev/brainflow' }}
	run: \|
	aws s3 cp $GITHUB_WORKSPACE/installed_docker/lib/ s3://brainflow/$GITHUB_SHA/linux --recursive
	env:
	AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
	AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
	- name: Push Libraries MacOS Dev
	if: ${{ github.event_name == 'push' && matrix.os == 'macos-11.0' && github.repository == 'brainflow-dev/brainflow' }}
	run: \|
	aws s3 cp $GITHUB_WORKSPACE/installed/lib/ s3://brainflow/$GITHUB_SHA/macos_release --recursive
	env:
	AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
	AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}

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Change Galea channels 7 and 8 to EMG #10

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Change Galea channels 7 and 8 to EMG #10

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