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07 .hvgx files (deprecated)

Jakob Troidl edited this page Feb 25, 2022 · 1 revision

Metafile (.hvgx)

  • sg, vast_id, flags, r,g,b, pattern1, r2, g2, b2, pattern2, anchorx, anchory, anchorz, parent_id, child_id, previous_sibiling_id, next_sibiling_id, collapsed, bboxx1, bboxy1, bboxz1, bboxx2, bboxy2, bboxz2, voxels, type, object_id, name

    • What do all these ids, parent-child relations mean?
    • Why do you have tree-like structures?
  • glycogen: gc, ID, x, y, z, diameter, name

  • mitochondria: mt, hvgxID, parentID, ... (?)

  • bouton: bo, id, vesicleNo, volume, surfaceArea, axon_id, name, is_terminal_branch, is_mitochondrion

  • spine: sp, id, psd_area, volume, dendrite_id, does_form_synapse, with_apparatus, has_glia_nearby, spine name

  • dendrite: dn, id, function (0:ex,1:in), abs_node_id, name

  • axons: ax, id, function (0:ex,1:in), is_mylenated, abs_node_id, name

  • abstract edges ae: axon_idx, dentride_idx

  • abstract nodes an:

  • synapse volume nodes vn: avg_vtx_x, avg_vtx_y, avg_vtx_z, 1, 0, 1, 1, name

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