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v1.4.0

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@jaleezyy jaleezyy released this 16 Apr 18:09
· 179 commits to master since this release
97f43fc
  • Add quick alignment of iVar and FreeBayes consensus sequences if FreeBayes is run
  • Updates to postprocessing reports including the addition of Pangolin lineage assignments and consensus nucleotide differences between iVar and FreeBayes
  • Individual sample and summary reports are more dynamic, only displaying information generated by optional tools if run through SIGNAL and output files found
  • SIGNAL ncov_tools now takes a list of negative control sample identifiers or prefixes to provide a more complete ncov-tools config.yaml file
  • Fixed a dependancy issue when running BreSeq through SIGNAL