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DOC Add versions and use pydata theme #173

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Jun 2, 2022
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16 changes: 16 additions & 0 deletions doc/_static/version_switcher.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
[
{
"name": "dev",
"version": "0.11.0.dev0",
"url": "https://lucyleeow.github.io/skan/dev"
},
{
"name": "0.10.x (stable)",
"version": "0.10.x",
"url": "https://lucyleeow.github.io/skan/0.10.x"
},
{
"version": "0.9.x",
"url": "https://lucyleeow.github.io/skan/0.9.x"
}
]
35 changes: 16 additions & 19 deletions doc/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -104,20 +104,23 @@
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.

html_theme = 'sphinx_material'
html_theme = 'pydata_sphinx_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#

html_theme = 'sphinx_material'

# Material theme options (see theme.conf for more information)
html_theme_options = {
# Set the name of the project to appear in the navigation.
'nav_title': 'Skan 🦴📏',

# pydata theme version switcher config
'navbar_end': ['version-switcher', 'navbar-icon-links'],
'switcher': {
'json_url': 'https://jni.github.io/skan/dev/_static/version_switcher.json',
'version_match': version,
},
# Set you GA account ID to enable tracking
# 'google_analytics_account': 'UA-XXXXX',

Expand All @@ -133,28 +136,22 @@
'repo_url': 'https://github.com/jni/skan/',
'repo_name': 'Skan',

# Visible levels of the global TOC; -1 means unlimited
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I think this may be from alabaster theme

'globaltoc_depth': 1,
# If False, expand all TOC entries
'globaltoc_collapse': False,
# If True, show hidden TOC entries
'globaltoc_includehidden': False,
# # Visible levels of the global TOC; -1 means unlimited
# 'globaltoc_depth': 1,
# # If False, expand all TOC entries
# 'globaltoc_collapse': False,
# # If True, show hidden TOC entries
# 'globaltoc_includehidden': False,
}

if 'dev' in version:
html_theme_options["switcher"]["version_match"] = "dev"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# This is required for the alabaster theme
# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
html_sidebars = {
"**": ["logo-text.html", "globaltoc.html", "localtoc.html", "searchbox.html"]
}

# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
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13 changes: 13 additions & 0 deletions doc/examples/index.rst
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@@ -0,0 +1,13 @@
========
Examples
========

skan examples.


.. toctree::
:maxdepth: 1

complete_analysis
sholl_analysis
visualizing_3d_skeletons
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12 changes: 12 additions & 0 deletions doc/getting_started/index.rst
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@@ -0,0 +1,12 @@
===============
Getting started
===============

Getting started with skan.


.. toctree::
:maxdepth: 1

install
getting_started
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15 changes: 5 additions & 10 deletions doc/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -9,18 +9,13 @@ Skeleton analysis with Skan 🦴📏
Skan is a pure Python library to analyse skeleton images.

.. toctree::
:maxdepth: 1
:maxdepth: 3

install
getting_started
gui
complete_analysis
visualizing_3d_skeletons
sholl_analysis
faq
citing
getting_started/index
examples/index
api/api
release-notes/index
gui
Miscellaneous <misc/index>


Indices and tables
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12 changes: 12 additions & 0 deletions doc/misc/index.rst
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@@ -0,0 +1,12 @@
=============
Miscellaneous
=============

FAQ, release notes and how to cite skan.

.. toctree::
:maxdepth: 3

faq
release-notes/index
citing
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2 changes: 1 addition & 1 deletion requirements/doc.txt
Original file line number Diff line number Diff line change
Expand Up @@ -5,5 +5,5 @@ tqdm>=4.11
nb2plots>=0.5
sphinxcontrib-bibtex
sphinx<2
sphinx_rtd_theme
pydata-sphinx-theme>=0.8.1
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seaborn>=0.9
1 change: 1 addition & 0 deletions setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -87,3 +87,4 @@ docs =
sphinxcontrib-bibtex
myst-nb
zarr
pydata-sphinx-theme>=0.8.1