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  • Princess Margaret Cancer Centre (University Health Network)
  • Toronto, Canada
  • LinkedIn in/joankant

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Achievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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  1. SysBioOncology/spatial_features_manuscript SysBioOncology/spatial_features_manuscript Public

    Code used in the paper 'Integrating histopathology and transcriptomics for spatial tumor microenvironment profiling in a melanoma case study' by Lapuente-Santana, Kant & Eduati.

    HTML 2

  2. SysBioOncology/SPoTLIghT SysBioOncology/SPoTLIghT Public

    SPoTLIghT, a computational framework to extract interpretable features of the spatial distribution of multiple cell types by combining unannotated pathology images with bulk transcriptomics.

    Python 3

  3. GaitiLab/scrnaseq-cellcomm-pipeline GaitiLab/scrnaseq-cellcomm-pipeline Public

    Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.

    Nextflow 4