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Update consep & monusac online configs to use ConvDecoderWithImage #865

Update consep & monusac online configs to use ConvDecoderWithImage

Update consep & monusac online configs to use ConvDecoderWithImage #865

Workflow file for this run

---
name: CI
on:
pull_request:
branches:
jobs:
quality:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
- name: Setting up PDM
uses: pdm-project/setup-pdm@568ddd69406b30de1774ec0044b73ae06e716aa4 # v4
with:
python-version: "3.10"
architecture: x64
- name: Setting up nox
uses: wntrblm/nox@5656fcedc31a1ea37d016e4d94d00185330cc528 # 2024.04.15
with:
python-versions: "3.10"
- name: Performing lint checks
run: nox -s lint
- name: Performing static type checks
run: nox -s check
tests:
strategy:
matrix:
os:
- ubuntu-latest
python-version:
- "3.10"
runs-on: ${{ matrix.os }}
steps:
- name: Install OS dependencies
run: |
sudo apt update
sudo apt install -y software-properties-common
sudo add-apt-repository ppa:openslide/openslide
sudo apt install -y openslide-tools
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
with:
lfs: true
- name: Setting up PDM
uses: pdm-project/setup-pdm@568ddd69406b30de1774ec0044b73ae06e716aa4 # v4
with:
python-version: ${{ matrix.python-version }}
architecture: x64
- name: Setting up nox
uses: wntrblm/nox@5656fcedc31a1ea37d016e4d94d00185330cc528 # 2024.04.15
with:
python-versions: ${{ matrix.python-version }}
- name: Executing unit tests
run: nox -s test
docs:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
- name: Setting up PDM
uses: pdm-project/setup-pdm@568ddd69406b30de1774ec0044b73ae06e716aa4 # v4
with:
python-version: "3.10"
architecture: x64
- name: Setting up nox
uses: wntrblm/nox@5656fcedc31a1ea37d016e4d94d00185330cc528 # 2024.04.15
with:
python-versions: "3.10"
- name: Configure Git Credentials
run: |
git config user.email "[email protected]"
git config user.name "GitHub Action"
- name: Building docs
run: nox -s docs -- deploy --update-aliases dev
security:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
- name: Perform gitleaks checks
run: |
# Download and check
curl -LJO https://github.com/gitleaks/gitleaks/releases/download/v8.18.2/gitleaks_8.18.2_linux_x64.tar.gz
curl -LJO https://github.com/gitleaks/gitleaks/releases/download/v8.18.2/gitleaks_8.18.2_checksums.txt
shasum -a 256 --ignore-missing --quiet -c gitleaks_8.18.2_checksums.txt
if [ $? != 0 ]; then exit 1; fi
# Extract gitleaks
tar -zxvf gitleaks_8.18.2_linux_x64.tar.gz gitleaks
# Run gitleaks
./gitleaks detect \
--config .gitleaks.toml \
--gitleaks-ignore-path .gitleaksignore \
--no-git