Added tidk/explore (#4587) #1

Run time

Learn about OS pricing on GitHub Actions

Job	Run time
nf-test-changes	7s
prettier	31s
editorconfig	14s
pre-commit	53s
pytest-changes	7s
nf-test (openms/decoydatabase, docker)	2m 4s
nf-test (openms/decoydatabase, singularity)	1m 49s
nf-test (openms/decoydatabase, conda)	2m 27s
nf-test (cat/cat, docker)	2m 11s
nf-test (cat/cat, singularity)	2m 33s
nf-test (cat/cat, conda)	3m 2s
nf-test (xz/decompress, docker)	1m 50s
nf-test (xz/decompress, singularity)	2m 17s
nf-test (xz/decompress, conda)	2m 9s
nf-test (xz/compress, docker)	2m 3s
nf-test (xz/compress, singularity)	1m 51s
nf-test (xz/compress, conda)	2m 1s
nf-test (bedtools/complement, docker)	1m 38s
nf-test (bedtools/complement, singularity)	1m 52s
nf-test (bedtools/complement, conda)	1m 51s
nf-test (bedtools/coverage, docker)	2m 0s
nf-test (bedtools/coverage, singularity)	2m 14s
nf-test (bedtools/coverage, conda)	2m 9s
nf-test (bedtools/closest, docker)	2m 6s
nf-test (bedtools/closest, singularity)	1m 57s
nf-test (bedtools/closest, conda)	18s
nf-test (bedtools/bamtobed, docker)	2m 6s
nf-test (bedtools/bamtobed, singularity)	2m 13s
nf-test (bedtools/bamtobed, conda)	2m 22s
nf-test (bedtools/genomecov, docker)	2m 6s
nf-test (bedtools/genomecov, singularity)	2m 6s
nf-test (bedtools/genomecov, conda)	2m 44s
nf-test (vcfanno, docker)	2m 1s
nf-test (vcfanno, singularity)	2m 38s
nf-test (vcfanno, conda)	2m 27s
nf-test (famsa/guidetree, docker)	1m 40s
nf-test (famsa/guidetree, singularity)	1m 48s
nf-test (famsa/guidetree, conda)	2m 2s
nf-test (cobs/compactconstruct, docker)	1m 56s
nf-test (cobs/compactconstruct, singularity)	1m 51s
nf-test (cobs/compactconstruct, conda)	2m 24s
nf-test (cobs/classicconstruct, docker)	1m 56s
nf-test (cobs/classicconstruct, singularity)	2m 20s
nf-test (cobs/classicconstruct, conda)	2m 38s
nf-test (mtmalign/align, docker)	1m 56s
nf-test (mtmalign/align, singularity)	2m 5s
nf-test (mtmalign/align, conda)	2m 12s
nf-test (proteinortho, docker)	2m 8s
nf-test (proteinortho, singularity)	1m 56s
nf-test (proteinortho, conda)	2m 15s
nf-test (filtlong, docker)	2m 8s
nf-test (filtlong, singularity)	2m 11s
nf-test (filtlong, conda)	2m 16s
nf-test (rseqc/junctionsaturation, docker)	2m 20s
nf-test (rseqc/junctionsaturation, singularity)	2m 16s
nf-test (rseqc/junctionsaturation, conda)	5m 13s
nf-test (rseqc/innerdistance, docker)	2m 32s
nf-test (rseqc/innerdistance, singularity)	2m 15s
nf-test (rseqc/innerdistance, conda)	5m 20s
nf-test (rseqc/readdistribution, docker)	2m 19s
nf-test (rseqc/readdistribution, singularity)	3m 15s
nf-test (rseqc/readdistribution, conda)	5m 27s
nf-test (rseqc/bamstat, docker)	2m 13s
nf-test (rseqc/bamstat, singularity)	3m 57s
nf-test (rseqc/bamstat, conda)	5m 22s
nf-test (rseqc/junctionannotation, docker)	2m 24s
nf-test (rseqc/junctionannotation, singularity)	2m 21s
nf-test (rseqc/junctionannotation, conda)	5m 25s
nf-test (rseqc/readduplication, docker)	2m 21s
nf-test (rseqc/readduplication, singularity)	2m 39s
nf-test (rseqc/readduplication, conda)	5m 20s
nf-test (rseqc/inferexperiment, docker)	2m 12s
nf-test (rseqc/inferexperiment, singularity)	6m 39s
nf-test (rseqc/inferexperiment, conda)	5m 14s
nf-test (rseqc/tin, docker)	2m 21s
nf-test (rseqc/tin, singularity)	2m 48s
nf-test (rseqc/tin, conda)	5m 19s
nf-test (fastqc, docker)	2m 4s
nf-test (fastqc, singularity)	2m 11s
nf-test (fastqc, conda)	2m 34s
nf-test (dragmap/hashtable, docker)	2m 6s
nf-test (dragmap/hashtable, singularity)	2m 10s
nf-test (dragmap/hashtable, conda)	2m 34s
nf-test (dragmap/align, docker)	2m 50s
nf-test (dragmap/align, singularity)	2m 21s
nf-test (dragmap/align, conda)	6m 9s
nf-test (pigz/compress, docker)	1m 47s
nf-test (pigz/compress, singularity)	1m 56s
nf-test (pigz/compress, conda)	2m 8s
nf-test (blast/blastn, docker)	1m 59s
nf-test (blast/blastn, singularity)	2m 3s
nf-test (blast/blastn, conda)	3m 0s
nf-test (checkm2/predict, docker)	7m 8s
nf-test (checkm2/predict, singularity)	5m 9s
nf-test (checkm2/predict, conda)	5m 19s
nf-test (checkm2/databasedownload, docker)	4m 6s
nf-test (checkm2/databasedownload, singularity)	4m 0s
nf-test (checkm2/databasedownload, conda)	6m 1s
nf-test (fastp, docker)	2m 45s
nf-test (fastp, singularity)	3m 27s
nf-test (fastp, conda)	4m 12s
nf-test (freebayes, docker)	2m 10s
nf-test (freebayes, singularity)	2m 9s
nf-test (freebayes, conda)	3m 43s
nf-test (abricate/run, docker)	2m 17s
nf-test (abricate/run, singularity)	2m 11s
nf-test (abricate/run, conda)	3m 3s
nf-test (tidk/search, docker)	2m 10s
nf-test (tidk/search, singularity)	3m 7s
nf-test (tidk/search, conda)	2m 39s
nf-test (tidk/explore, docker)	2m 2s
nf-test (tidk/explore, singularity)	2m 39s
nf-test (tidk/explore, conda)	2m 16s
nf-test (bowtie2/align, docker)	3m 12s
nf-test (bowtie2/align, singularity)	3m 20s
nf-test (bowtie2/align, conda)	8m 43s
nf-test (bacphlip, docker)	2m 3s
nf-test (bacphlip, singularity)	2m 15s
nf-test (bacphlip, conda)	2m 14s
nf-test (gatk4/applybqsr, docker)	2m 40s
nf-test (gatk4/applybqsr, singularity)	2m 45s
nf-test (gatk4/applybqsr, conda)	3m 29s
nf-test (gatk4/markduplicates, docker)	2m 37s
nf-test (gatk4/markduplicates, singularity)	2m 47s
nf-test (gatk4/markduplicates, conda)	3m 55s
nf-test (vsearch/cluster, docker)	2m 35s
nf-test (vsearch/cluster, singularity)	2m 38s
nf-test (vsearch/cluster, conda)	2m 54s
nf-test (umitools/extract, docker)	2m 34s
nf-test (umitools/extract, singularity)	2m 52s
nf-test (umitools/extract, conda)	2m 52s
nf-test (freyja/variants, docker)	3m 3s
nf-test (freyja/variants, singularity)	3m 25s
nf-test (freyja/variants, conda)	6m 49s
nf-test (freyja/update, docker)	2m 24s
nf-test (freyja/update, singularity)	2m 6s
nf-test (freyja/update, conda)	2m 54s
nf-test (freyja/boot, docker)	2m 31s
nf-test (freyja/boot, singularity)	2m 8s
nf-test (freyja/boot, conda)	4m 0s
nf-test (freyja/demix, docker)	3m 5s
nf-test (freyja/demix, singularity)	2m 21s
nf-test (freyja/demix, conda)	3m 50s
nf-test (aria2, docker)	1m 59s
nf-test (aria2, singularity)	1m 55s
nf-test (aria2, conda)	2m 5s
nf-test (gt/gff3, docker)	2m 6s
nf-test (gt/gff3, singularity)	2m 4s
nf-test (gt/gff3, conda)	2m 33s
nf-test (hmmcopy/generatemap, docker)	1m 58s
nf-test (hmmcopy/generatemap, singularity)	2m 25s
nf-test (hmmcopy/generatemap, conda)	2m 40s
nf-test (hmmcopy/gccounter, docker)	1m 44s
nf-test (hmmcopy/gccounter, singularity)	1m 55s
nf-test (hmmcopy/gccounter, conda)	2m 21s
nf-test (hmmcopy/readcounter, docker)	1m 47s
nf-test (hmmcopy/readcounter, singularity)	2m 28s
nf-test (hmmcopy/readcounter, conda)	2m 22s
nf-test (hmmcopy/mapcounter, docker)	1m 50s
nf-test (hmmcopy/mapcounter, singularity)	2m 15s
nf-test (hmmcopy/mapcounter, conda)	2m 5s
nf-test (deepcell/mesmer, docker)	3m 5s
nf-test (deepcell/mesmer, singularity)	4m 46s
nf-test (ariba/run, docker)	2m 57s
nf-test (ariba/run, singularity)	3m 21s
nf-test (ariba/run, conda)	3m 37s
nf-test (tcoffee/alncompare, docker)	2m 38s
nf-test (tcoffee/alncompare, singularity)	2m 6s
nf-test (tcoffee/alncompare, conda)	3m 21s
nf-test (tcoffee/irmsd, docker)	2m 26s
nf-test (tcoffee/irmsd, singularity)	2m 9s
nf-test (tcoffee/irmsd, conda)	3m 12s
nf-test (subworkflows/utils_nfvalidation_plugin, docker)	2m 6s
nf-test (subworkflows/utils_nfvalidation_plugin, singularity)	2m 16s
nf-test (subworkflows/utils_nfvalidation_plugin, conda)	2m 4s
nf-test (subworkflows/bam_markduplicates_picard, docker)	2m 25s
nf-test (subworkflows/bam_markduplicates_picard, singularity)	3m 43s
nf-test (subworkflows/bam_markduplicates_picard, conda)	4m 6s
nf-test (subworkflows/bam_rseqc, docker)	2m 19s
nf-test (subworkflows/bam_rseqc, singularity)	2m 52s
nf-test (subworkflows/bam_rseqc, conda)	4m 51s
nf-core-lint (angsd/contamination)	50s
nf-core-lint (bowtie/align)	54s
pytest (angsd/contamination, docker)	2m 24s
nf-core-lint (cellranger/mkvdjref)	1m 0s
pytest (angsd/contamination, singularity)	3m 17s
nf-core-lint (custom/tabulartogseacls)	44s
pytest (angsd/contamination, conda)	3m 11s
nf-core-lint (deeparg/downloaddata)	1m 0s
pytest (bowtie/align, docker)	2m 15s
nf-core-lint (deeparg/predict)	58s
pytest (bowtie/align, singularity)	2m 17s
nf-core-lint (faqcs)	54s
pytest (bowtie/align, conda)	3m 53s
nf-core-lint (gprofiler2/gost)	44s
nf-core-lint (mash/sketch)	51s
pytest (cellranger/mkvdjref, docker)	2m 37s
nf-core-lint (motus/profile)	42s
pytest (cellranger/mkvdjref, singularity)	4m 31s
nf-core-lint (ncbigenomedownload)	45s
pytest (custom/tabulartogseacls, docker)	2m 23s
nf-core-lint (parabricks/deepvariant)	42s
pytest (custom/tabulartogseacls, singularity)	2m 14s
nf-core-lint (parabricks/fq2bam)	43s
pytest (custom/tabulartogseacls, conda)	2m 55s
nf-core-lint (parabricks/indexgvcf)	59s
pytest (deeparg/downloaddata, docker)	3m 52s
nf-core-lint (parabricks/haplotypecaller)	42s
pytest (deeparg/downloaddata, singularity)	4m 26s
nf-core-lint (parabricks/mutectcaller)	53s
pytest (deeparg/downloaddata, conda)	5m 8s
nf-core-lint (pretextsnapshot)	54s
pytest (deeparg/predict, docker)	7m 20s
nf-core-lint (purgedups/calcuts)	1m 9s
pytest (deeparg/predict, singularity)	7m 6s
nf-core-lint (purgedups/purgedups)	48s
pytest (deeparg/predict, conda)	8m 22s
nf-core-lint (umitools/dedup)	54s
pytest (faqcs, docker)	2m 19s
nf-core-lint (umitools/group)	42s
pytest (faqcs, singularity)	3m 1s
nf-core-lint (openms/decoydatabase)	47s
pytest (faqcs, conda)	2m 35s
nf-core-lint (cat/cat)	58s
pytest (gprofiler2/gost, docker)	2m 50s
nf-core-lint (xz/decompress)	46s
pytest (gprofiler2/gost, singularity)	2m 38s
nf-core-lint (xz/compress)	48s
pytest (gprofiler2/gost, conda)	3m 14s
nf-core-lint (bedtools/complement)	45s
pytest (mash/sketch, docker)	1m 58s
nf-core-lint (bedtools/coverage)	1m 5s
pytest (mash/sketch, singularity)	2m 12s
nf-core-lint (bedtools/closest)	56s
pytest (mash/sketch, conda)	3m 2s
nf-core-lint (bedtools/bamtobed)	1m 5s
pytest (motus/profile, docker)	6m 51s
nf-core-lint (bedtools/genomecov)	48s
pytest (motus/profile, singularity)	38m 21s
pytest (motus/profile, conda)	40m 21s
pytest (ncbigenomedownload, docker)	2m 11s
nf-core-lint (vcfanno)	43s
pytest (ncbigenomedownload, singularity)	2m 18s
nf-core-lint (famsa/guidetree)	52s
pytest (ncbigenomedownload, conda)	2m 29s
nf-core-lint (cobs/compactconstruct)	47s
pytest (parabricks/deepvariant, docker)	3m 21s
nf-core-lint (cobs/classicconstruct)	51s
pytest (parabricks/deepvariant, singularity)	4m 37s
nf-core-lint (mtmalign/align)	1m 2s
pytest (parabricks/fq2bam, docker)	3m 49s
nf-core-lint (proteinortho)	48s
pytest (parabricks/fq2bam, singularity)	4m 58s
nf-core-lint (filtlong)	42s
pytest (parabricks/indexgvcf, docker)	2m 51s
nf-core-lint (rseqc/junctionsaturation)	51s
pytest (parabricks/indexgvcf, singularity)	4m 17s
nf-core-lint (rseqc/innerdistance)	1m 47s
pytest (parabricks/haplotypecaller, docker)	2m 53s
nf-core-lint (rseqc/readdistribution)	1m 16s
pytest (parabricks/haplotypecaller, singularity)	4m 41s
nf-core-lint (rseqc/bamstat)	43s
pytest (parabricks/mutectcaller, docker)	2m 59s
nf-core-lint (rseqc/junctionannotation)	50s
pytest (parabricks/mutectcaller, singularity)	4m 49s
nf-core-lint (rseqc/readduplication)	46s
pytest (pretextsnapshot, docker)	3m 20s
nf-core-lint (rseqc/inferexperiment)	46s
pytest (pretextsnapshot, singularity)	4m 27s
nf-core-lint (rseqc/tin)	56s
pytest (pretextsnapshot, conda)	4m 1s
nf-core-lint (fastqc)	52s
pytest (purgedups/calcuts, docker)	1m 56s
nf-core-lint (dragmap/hashtable)	44s
pytest (purgedups/calcuts, singularity)	2m 46s
nf-core-lint (dragmap/align)	53s
pytest (purgedups/calcuts, conda)	3m 39s
nf-core-lint (pigz/compress)	52s
pytest (purgedups/purgedups, docker)	1m 56s
nf-core-lint (blast/blastn)	45s
pytest (purgedups/purgedups, singularity)	1m 50s
nf-core-lint (checkm2/predict)	58s
pytest (purgedups/purgedups, conda)	4m 21s
nf-core-lint (checkm2/databasedownload)	43s
pytest (umitools/dedup, docker)	4m 26s
nf-core-lint (fastp)	47s
pytest (umitools/dedup, singularity)	2m 55s
nf-core-lint (freebayes)	1m 21s
pytest (umitools/dedup, conda)	7m 38s
nf-core-lint (abricate/run)	1m 3s
pytest (umitools/group, docker)	2m 46s
pytest (umitools/group, singularity)	3m 5s
nf-core-lint (tidk/search)	55s
pytest (umitools/group, conda)	6m 14s
nf-core-lint (tidk/explore)	1m 1s
nf-core-lint (bowtie2/align)	53s
nf-core-lint (bacphlip)	46s
nf-core-lint (gatk4/applybqsr)	43s
nf-core-lint (gatk4/markduplicates)	1m 10s
nf-core-lint (vsearch/cluster)	58s
nf-core-lint (umitools/extract)	43s
nf-core-lint (freyja/variants)	52s
nf-core-lint (freyja/update)	41s
nf-core-lint (freyja/boot)	1m 6s
nf-core-lint (freyja/demix)	39s
nf-core-lint (aria2)	53s
nf-core-lint (gt/gff3)	57s
nf-core-lint (hmmcopy/generatemap)	48s
nf-core-lint (hmmcopy/gccounter)	48s
nf-core-lint (hmmcopy/readcounter)	51s
nf-core-lint (hmmcopy/mapcounter)	51s
nf-core-lint (deepcell/mesmer)	1m 0s
nf-core-lint (ariba/run)	46s
nf-core-lint (tcoffee/alncompare)	45s
nf-core-lint (tcoffee/irmsd)	46s
nf-core-lint (subworkflows/utils_nfvalidation_plugin)	51s
nf-core-lint (subworkflows/bam_markduplicates_picard)	40s
nf-core-lint (subworkflows/bam_rseqc)	55s
confirm-pass	1s
	14h 3m 18s

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Added tidk/explore (#4587) #1

Usage

Added tidk/explore (#4587) #1

Jobs

Run details

Run time