Update baseline commit

ksahlin · Dec 17, 2023 · f4a8dd2 · f4a8dd2
1 parent 85030cf
commit f4a8dd2
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -68,7 +68,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - run: cat tests/baseline-commit.txt >> $GITHUB_ENV
+      - run: "(echo -n baseline_commit=; cat tests/baseline-commit.txt ) >> $GITHUB_ENV"
       - uses: actions/checkout@v3
         with:
           ref: ${{ env.baseline_commit }}

diff --git a/tests/baseline-commit.txt b/tests/baseline-commit.txt
@@ -1 +1 @@
-baseline_commit=54f9fe4266ae0ab7843ee7fb70ddfbc2d95dc729
+85030cfa81ffebfd21dadc339b4dff72176d91c0
diff --git a/tests/compare-baseline.sh b/tests/compare-baseline.sh
@@ -33,7 +33,7 @@ fi
 # Ensure test data is available
 tests/download.sh
 
-source tests/baseline-commit.txt
+baseline_commit=$(< tests/baseline-commit.txt)
 
 baseline_bam=baseline/baseline-${baseline_commit}.${ends}.bam
 baseline_binary=baseline/strobealign-${baseline_commit}