Release v0.9.0 · ksahlin/strobealign

Changes

#225: Add progress report (only shown if output is not a terminal; can be disabled with --no-progress)
#250: Avoid overeager soft clipping by adding an “end bonus” to the alignment score if the alignment reaches the 5' or 3' end of the read. This is equivalent to penalizing soft-clipping and improves mapping accuracy, in particular for short reads, as candidate mapping sites with and without soft clipping are compared more fairly. Use -L to change the end bonus. (This emulates a feature found in BWA-MEM.)
#238: Fix occasionally incorrect soft clipping.
#239: Fix an uninitialized variable that could lead to nondeterministic results.
#137: Compute TLEN (in SAM output) correctly
#255: Add support for reading gzip-compressed reference FASTA files.
#222: Make it possible again to build strobealign from the release tarball (not only from the Git repository).