Added support for ASHLAR's fileseries/filepattern feature (#535) #512
ArtemSokolovAnnotations
6 errors and 12 warnings
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ex001 (--viz --segmentation ilastik -profile singularity)
Process completed with exit code 1.
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ex001 (--segmentation cypository --cypository-opts '--channel 10 --scalingFactor 2' --s3seg-opts ...
The operation was canceled.
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ex001 (--segmentation cellpose --mcquant-opts '--masks *masks.tif')
The operation was canceled.
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ex001 (--viz)
The operation was canceled.
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ex001 (--background)
The operation was canceled.
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ex001 (--background --background-method imagej-rolling-ball)
The operation was canceled.
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setup
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001-by-step
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--segmentation ilastik,mesmer)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--start-at illumination --stop-at registration)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex002
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--viz --segmentation ilastik -profile singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, eWaterCycle/setup-singularity@v7, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--viz --segmentation ilastik -profile singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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ex001 (--segmentation cypository --cypository-opts '--channel 10 --scalingFactor 2' --s3seg-opts ...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--segmentation cellpose --mcquant-opts '--masks *masks.tif')
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--viz)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--background)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ex001 (--background --background-method imagej-rolling-ball)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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