Update ontologies #1
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| name: Update ontologies | |
| on: | |
| schedule: | |
| - cron: "0 0 1 */3 *" # runs at 00:00 UTC on the first day of every 3rd month | |
| workflow_dispatch: | |
| jobs: | |
| test-urls: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v4 | |
| - name: setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install Bionty | |
| run: pip install .[dev] | |
| - name: check URLs | |
| run: python ./bionty/base/scripts/update_new_ontologies.py |