🧪 Run tests

noxfile.py

@@ -10,19 +10,21 @@ def lint(session: nox.Session) -> None:
     run_pre_commit(session)
 
 
-# @nox.session
-# def docs(session: nox.Session):
-#     import lamindb_setup as ln_setup
-
-#     login_testuser1(session)
-#     ln_setup.init(storage="./docsbuild")
-#     build_docs(session)
+@nox.session
+def docs(session: nox.Session):
+    build_docs(session, strict=True)
 
 
-@nox.session()
-def build(session):
-    session.run(*"pip install -e .[dev]".split())
+@nox.session
+@nox.parametrize("group", ["bionty-unit", "bionty-docs"])
+def build(session: nox.Session, group: str):
+    session.run(*"uv pip install --system -e .[dev]".split())
     # session.run(*"pip install git+https://github.com/laminlabs/lamindb".split())
-    # run_pytest(session, coverage=False)
-    # docs(session)
-    # move_built_docs_to_docs_slash_project_slug()
+    # session.run(*"pip install git+https://github.com/laminlabs/lamindb-setup".split())
+    # session.run(*"pip install git+https://github.com/laminlabs/lnschema-core".split())
+    coverage_args = "--cov=bionty --cov-append --cov-report=term-missing"
+    if group == "bionty-unit":
+        session.run(*f"pytest {coverage_args} ./tests".split())
+    elif group == "bionty-docs":
+        session.run(*f"pytest -s {coverage_args} ./docs/guide".split())
+        docs(session)

pyproject.toml

@@ -14,21 +14,25 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
 ]
 dependencies = [
-    "lnschema_core>=0.69.0",
-    "bionty_base==0.38.0",
+    "lamindb",
+    "filelock",
+    "requests",
+    "pyyaml",
 ]
 
 [project.urls]
 Home = "https://github.com/laminlabs/bionty"
 
 [project.optional-dependencies]
-test = [
+dev = [
     "pre-commit",
     "nox",
     "requests",
     "pytest>=6.0",
     "pytest-cov",
     "nbproject-test",
+    "pronto>=2.5.4, <2.5.6",
+    "laminci",
 ]
 
 [tool.pytest.ini_options]