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  1. cysdb_app cysdb_app Public

    Integrating chemoproteomics, protein structures, and functional annotations to understand the role of cysteines in the human proteome.

    Jupyter Notebook 3 3

  2. ms_cpdaa_analysis ms_cpdaa_analysis Public

    Mass spectrometry-based chemoproteomics pipeline for analyzing electrophile selectivity and identifying chemoproteomics detected amino acids (CpDAAs).

    Python 1

  3. residue_function_annotations residue_function_annotations Public

    Identify small-molecule sites of labeling that are annotated as active sites, binding sites, disulfide bonds and redox active sites

    Jupyter Notebook 2

  4. protein_structure_annotations protein_structure_annotations Public

    Map residue numbers from experimental protein structures to primary protein sequences and calculate the relative solvent accessibility of each residue

    Python 2