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Fix to #14. I believe that this should update the things that have changed from the migration from pretrainedbert to pytorch-transformers. This update runs fine for me using the toxic Kaggle dataset however, I think there may be some other things in trainer.py that I have missed.
Also in bert_fine.py, I have commented out
output_all_encoded_layers
in the forward function as I'm not sure how to include this