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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    916 99

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 658 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 466 102

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 389 91

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 300 29

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 282 19

Repositories

Showing 10 of 38 repositories
  • meryl Public

    A genomic k-mer counter (and sequence utility) with nice features.

    marbl/meryl’s past year of commit activity
    C 115 13 35 0 Updated Nov 5, 2024
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Nov 5, 2024
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 16 3 0 0 Updated Nov 1, 2024
  • seqrequester Public

    A tool for summarizing, extracting, generating and modifying DNA sequences.

    marbl/seqrequester’s past year of commit activity
    C 23 4 2 0 Updated Oct 31, 2024
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 300 29 23 0 Updated Oct 28, 2024
  • Primates Public

    Complete assemblies of non-human primate genomes

    marbl/Primates’s past year of commit activity
    38 3 1 0 Updated Oct 14, 2024
  • MashMap Public

    A fast approximate aligner for long DNA sequences

    marbl/MashMap’s past year of commit activity
    C++ 268 39 21 0 Updated Oct 11, 2024
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 118 MIT 9 5 0 Updated Oct 6, 2024
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 658 179 6 2 Updated Sep 30, 2024
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 128 25 28 0 Updated Sep 28, 2024
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