Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Strange GFA outputs in uncompressed gfa #199

Open
skoren opened this issue Sep 28, 2023 · 0 comments
Open

Strange GFA outputs in uncompressed gfa #199

skoren opened this issue Sep 28, 2023 · 0 comments
Milestone
v2.3

Comments

@skoren
Copy link
Member

skoren commented Sep 28, 2023

The GFA seem to have cigar string operations longer than either node. Also have 0M edges where we couldn't find the overlap post-consensus. Consider also updating the gfa to trim back nodes to similar size pre-uncompression.
@skoren skoren added this to the v2.0 milestone Sep 28, 2023
@skoren skoren modified the milestones: v2.0, v2.1 Jan 16, 2024
@skoren skoren modified the milestones: v2.1, v2.3 Oct 21, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
verkko development tasks
Status: No status
Milestone
v2.3
Development

No branches or pull requests
1 participant
@skoren