Poisson context likelihood and better cli flexibility (#126) #6

	name: format and lint

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	format-and-lint:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout 🛎️
	uses: actions/checkout@v3

	- name: Install Pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Install miniconda and create environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: gctree
	environment-file: environment.yml
	python-version: "3.10"
	auto-activate-base: false
	auto-update-conda: true

	- name: Lint
	# NOTE: must specify the shell so that conda init updates bashrc see:
	# https://github.com/conda-incubator/setup-miniconda#IMPORTANT
	shell: bash -l {0}
	run: make lint

	- name: Check format with black
	shell: bash -l {0}
	run: black --check gctree

	- name: Test docs build
	# NOTE: only run on ubuntu-latest to save on compute usage
	shell: bash -l {0}
	run: \|
	make docs
	env:
	QT_QPA_PLATFORM: offscreen
	MPLBACKEND: agg

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