community_standards_supplemental

Supplemental Information for our community standards manuscript available on BioRxiv.

Data S1: Community survey results

This dataset includes the questions and results from the January 2019 community survey administered by Maureen Carey, Jason Papin, and James Yurkovich.

iPfal19.xml: example genome-scale metabolic network reconstruction

This reconstruction (named iPfal19) represents the metabolism of the blood-stage Plasmodium falciparum (malaria) parasite.

model_README/README.md

This README file documents the reconstruction and curation history of iPfal19.

Reconstruction Tutorials

Two tutorials (written in python or MATLAB using CobraPy or CobraToolbox, respectively) demonstrate how to access or modify standardized information in a reconstruction.

Contact Information

Contact Maureen Carey at mac9jc at virginia dot edu with any questions.